PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G10310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 449aa    MW: 47468.9 Da    PI: 8.9293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G10310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05203226123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg++ s + +L+ H+ + H
  LPERR03G10310.1 203 FPCKVCGEVMSKPQQLELHQAMkH 226
                      89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.85203231IPR007087Zinc finger, C2H2
PROSITE patternPS000280205226IPR007087Zinc finger, C2H2
SuperFamilySSF563993.07E-12228448No hitNo description
Gene3DG3DSA:3.90.228.103.1E-8230448IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAGSSLLRGF VSLFFLLFLH IGNAGCCFST GSSAQTVDED DAAPHGVGGG GNKRRKISPL  60
AFSPSVSSST VAADARASAR RRRQASSLAT SFRFYLHRIF SYSSGGAKNG AAAVPSTEEA  120
YDDPVTTTVS SPLAHSSSLP PHQRQAAASV VLSTPSSPSC ASSPFLSPLS PRSLSVTPVA  180
TVPSSPRSKQ VPRQSSSRSF AVFPCKVCGE VMSKPQQLEL HQAMKHSLSE LSTLDSSMNI  240
IRMIFLAGWN PSTPAGEPPS VRRILRIHHN PRALARFEEY RDLVRARAAR GRCASAAEER  300
CVADGNERLR FYCSTMLCAL GGAGGVCGSP YCCTCSILRH GFAGKQADVD GIATYSSGRA  360
AHASLPDDVE REFAFLQVRR TMLVCRVVAG RVGRGAADDK DVAYDSMVPL LPAASSAAAA  420
AGRGGDDDVE LLVFNPRAVL PCFVIIYSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G10310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629299.10.0uncharacterized protein LOC4332342
TrEMBLA0A0D9VS920.0A0A0D9VS92_9ORYZ; Uncharacterized protein
STRINGLPERR03G10310.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.17e-46C2H2 family protein