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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G10190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 23973.6 Da PI: 4.7915 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6e-18 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g LPERR03G10190.1 28 PYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 77 59****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.918 | 28 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-34 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-29 | 28 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 29 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 29 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.5E-11 | 29 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-19 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 5.1E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVKNPSNKCG GGGGDGKRME AEAMTVRPYK GVRMRSWGSW VSEIRAPHQK RRIWLGSYAT 60 PEAAARAYDA ALLCLKGSDA VLNFPSSSSR RLDAAGDDSR GGDMSPRSIQ RVAAAAAAAF 120 DHAGVGVIVD DASCSSSGAE GMTSTSTMGS GGGGGDALEH AAATPSSSST AAANACSPTL 180 VEGDHELWTE LDAFASPKFM DLMAAGGTPF SSPWDQEPEE DGELMRLWSF C |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G10190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135206 | 4e-85 | AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence. | |||
GenBank | AP014959 | 4e-85 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 4e-85 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630150.1 | 5e-84 | ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | A0A0D9VS79 | 1e-166 | A0A0D9VS79_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G10190.1 | 1e-167 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 9e-28 | ERF family protein |