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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR03G08770.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 304aa MW: 33615.3 Da PI: 10.6182 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G08770.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 86.6 | 8.6e-27 | 1 | 231 | 1 | 200 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.......rernlalsekkaavaerd.................maflqrdkala 68
mddd+s + rn+g+ye k nlglqlmss++ ++d+k+ + ++++a++++rd ++f+++d++++
LPERR03G08770.1 1 MDDDASLSfRNWGFYETM---KGNLGLQLMSSVPaDQDTKPllqngtfL---QHHTHHNAPHHPRDcgggasgglpteppavhIDFARNDAWMH 88
9**************965...************99******66433211...22356778899******************************* PP
GAGA_bind 69 e.rnkalverdnkllalllvensla..................salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaee 143
++++ ++ +++ l ++v+ + +++p+g+++l++++ +++lq+ ++++ + +ee+++++ iee+ +
LPERR03G08770.1 89 PsQHQHPHPSQHQHLREQKVHAPPVrvgpaghighpglgghavHHHPTGYGMLPEAHGLHTLQM-----MQPQEPPPLKEEHISEPLIEENSVV 177
94455556666666666655554447889999***********9********************.....6666666567777999999997666 PP
GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlng 200
+e ++kk +++++pk+++ kk+kk +++++++ +++++ +r++ +kk +++v+ng
LPERR03G08770.1 178 RSELPTKK--RKQRQPKTPRPKKPKK-PPAPREDGAPNGHAPRRRGPKKALGMVING 231
66665555..88999**********9.999*9*******99**************96 PP
|
| 2 | GAGA_bind | 169.8 | 3.9e-52 | 230 | 304 | 227 | 301 |
GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
nGGWqSaCCtt+iS+yPLP+stkrrg RiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
LPERR03G08770.1 230 NGGWQSACCTTSISTYPLPMSTKRRGVRIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKFVTIR 304
7*************************************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MDDDASLSFR NWGFYETMKG NLGLQLMSSV PADQDTKPLL QNGTFLQHHT HHNAPHHPRD 60
CGGGASGGLP TEPPAVHIDF ARNDAWMHPS QHQHPHPSQH QHLREQKVHA PPVRVGPAGH 120
IGHPGLGGHA VHHHPTGYGM LPEAHGLHTL QMMQPQEPPP LKEEHISEPL IEENSVVRSE 180
LPTKKRKQRQ PKTPRPKKPK KPPAPREDGA PNGHAPRRRG PKKALGMVIN GGWQSACCTT 240
SISTYPLPMS TKRRGVRIAG RKMSQGAFKK VLEKLAGEGY NLANPIDLKT FWAKHGTNKF 300
VTIR
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 184 | 199 | KRKQRQPKTPRPKKPK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
