PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G08460.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 822aa MW: 89024.9 Da PI: 6.4685 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.5e-11 | 646 | 694 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq LPERR03G08460.2 646 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 694 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50053 | 8.742 | 1 | 92 | IPR000626 | Ubiquitin domain |
Gene3D | G3DSA:3.10.20.90 | 5.8E-7 | 20 | 97 | No hit | No description |
PROSITE profile | PS50181 | 10.902 | 337 | 383 | IPR001810 | F-box domain |
SuperFamily | SSF81383 | 4.58E-13 | 337 | 409 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 8.7E-11 | 340 | 418 | No hit | No description |
Pfam | PF00646 | 4.8E-5 | 342 | 384 | IPR001810 | F-box domain |
SMART | SM00256 | 9.3E-5 | 343 | 383 | IPR001810 | F-box domain |
CDD | cd00083 | 3.09E-11 | 641 | 698 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-17 | 641 | 709 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.796 | 643 | 693 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 643 | 711 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 646 | 694 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 649 | 699 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MKLRLRSMDH RGAAAAAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLAADPSA TLPALGVASG DLLYFTLSPL ASPAPAPPQP PRQPQPLPRN PSPDVTSIAR 120 AVAPAKSAVE SGSSSSLPQA LCVNPGLPSA SVPHPPVDVV MAEAIAETKR TSSFVVRVMK 180 REMENAGVAD GTVIYRLAVA LHAALIDSGF LSANAVGSRL QLPYDWASGS SIPVSVKYTL 240 PELVAELPAV EEGMVAVLNY SLMGNYMMIY GYVPGVKPEV QRLCLELPKL APLLYLDSDE 300 VSASEEREIH GLWRMLKDEI CLPLMILLCR LNNLSFPPCL MALPGDVKAK VLEFVPGVNL 360 ARVQCTCKEL RDLAADDNLW KKKCEMEFNA QGEGSRVSRN WKERFVAAWK VSANKRPRML 420 SPRFLNYGWG NPYSPHGFPT GSHLLGSPIF LGAALGISAG TSHPAAILVD NVTTFLVYLC 480 NYGQKPVAEL SRAAVNSQGH CFAVGDNQLA SLDLAMDFDE PILFPVHNAG LQEGVQFYNP 540 TSDTQLSRNM SIDKCLKGSK RKGSGEGSSS LHSQVTDNYN SLLLDHLLGA CIILSSPKIV 600 LVQEETGEMS QREISMEHVG EKVVGDADTS RDDYVHVRAK RGQATNSHSL AERFRREKIN 660 ERMKLLQDLV PGCNKITGKA MMLDEIINYV QSLQRQVEFL SMKLSTISPE LNSELDLQEI 720 LCSQDAHSAL FLGCSPRLSS ASPNLYRAAQ QGLSRPGLYG SLSVPTPADA HMARTAHMAE 780 FPQQRGLVWN DELHNIAPAS FSFTSDAAGT GSLENSDSMK VE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G08460.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135157 | 0.0 | AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631331.1 | 0.0 | F-box protein SKIP22 | ||||
TrEMBL | A0A0D9VRK5 | 0.0 | A0A0D9VRK5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G08460.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4536 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 8e-43 | bHLH family protein |