PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G08460.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 793aa MW: 85890.2 Da PI: 6.5114

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G08460.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	617	665	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq LPERR03G08460.1 617 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 665 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.742	1	92	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	5.5E-7	20	97	No hit	No description
PROSITE profile	PS50181	10.902	337	383	IPR001810	F-box domain
SuperFamily	SSF81383	4.32E-13	337	409	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	8.3E-11	340	418	No hit	No description
Pfam	PF00646	4.6E-5	342	384	IPR001810	F-box domain
SMART	SM00256	9.3E-5	343	383	IPR001810	F-box domain
CDD	cd00083	2.90E-11	612	669	No hit	No description
SuperFamily	SSF47459	4.06E-17	612	680	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.796	614	664	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	614	682	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-9	617	665	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	620	670	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MKLRLRSMDH RGAAAAAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLAADPSA TLPALGVASG DLLYFTLSPL ASPAPAPPQP PRQPQPLPRN PSPDVTSIAR 120 AVAPAKSAVE SGSSSSLPQA LCVNPGLPSA SVPHPPVDVV MAEAIAETKR TSSFVVRVMK 180 REMENAGVAD GTVIYRLAVA LHAALIDSGF LSANAVGSRL QLPYDWASGS SIPVSVKYTL 240 PELVAELPAV EEGMVAVLNY SLMGNYMMIY GYVPGVKPEV QRLCLELPKL APLLYLDSDE 300 VSASEEREIH GLWRMLKDEI CLPLMILLCR LNNLSFPPCL MALPGDVKAK VLEFVPGVNL 360 ARVQCTCKEL RDLAADDNLW KKKCEMEFNA QGEGSRVSRN WKERFVAAWK VSANKRPRML 420 SPRFLNYGWG NPYSPHGFPT GSHLLGSPIF LGAALGISAG TSHPAAILVD NVTTFLVYLC 480 NYGQKPVAEL SRAAVNSQGH CFAVGDNQLA SLDLAMDFDE PILFPVHNAG LQEGVQFYNP 540 TSDTQLSRNM SIDKCLKGSK RKGSGEGSSS LHSQEETGEM SQREISMEHV GEKVVGDADT 600 SRDDYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL VPGCNKITGK AMMLDEIINY 660 VQSLQRQVEF LSMKLSTISP ELNSELDLQE ILCSQDAHSA LFLGCSPRLS SASPNLYRAA 720 QQGLSRPGLY GSLSVPTPAD AHMARTAHMA EFPQQRGLVW NDELHNIAPA SFSFTSDAAG 780 TGSLENSDSM KVE

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MKLRLRSMDH RGAAAAAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLAADPSA TLPALGVASG DLLYFTLSPL ASPAPAPPQP PRQPQPLPRN PSPDVTSIAR  120
AVAPAKSAVE SGSSSSLPQA LCVNPGLPSA SVPHPPVDVV MAEAIAETKR TSSFVVRVMK  180
REMENAGVAD GTVIYRLAVA LHAALIDSGF LSANAVGSRL QLPYDWASGS SIPVSVKYTL  240
PELVAELPAV EEGMVAVLNY SLMGNYMMIY GYVPGVKPEV QRLCLELPKL APLLYLDSDE  300
VSASEEREIH GLWRMLKDEI CLPLMILLCR LNNLSFPPCL MALPGDVKAK VLEFVPGVNL  360
ARVQCTCKEL RDLAADDNLW KKKCEMEFNA QGEGSRVSRN WKERFVAAWK VSANKRPRML  420
SPRFLNYGWG NPYSPHGFPT GSHLLGSPIF LGAALGISAG TSHPAAILVD NVTTFLVYLC  480
NYGQKPVAEL SRAAVNSQGH CFAVGDNQLA SLDLAMDFDE PILFPVHNAG LQEGVQFYNP  540
TSDTQLSRNM SIDKCLKGSK RKGSGEGSSS LHSQEETGEM SQREISMEHV GEKVVGDADT  600
SRDDYVHVRA KRGQATNSHS LAERFRREKI NERMKLLQDL VPGCNKITGK AMMLDEIINY  660
VQSLQRQVEF LSMKLSTISP ELNSELDLQE ILCSQDAHSA LFLGCSPRLS SASPNLYRAA  720
QQGLSRPGLY GSLSVPTPAD AHMARTAHMA EFPQQRGLVW NDELHNIAPA SFSFTSDAAG  780
TGSLENSDSM KVE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G08460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631331.1	0.0	F-box protein SKIP22
TrEMBL	A0A0D9VRK4	0.0	A0A0D9VRK4_9ORYZ; Uncharacterized protein
STRING	LPERR03G08460.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	7e-43	bHLH family protein