PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR03G07880.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 855aa MW: 95779 Da PI: 5.4491

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G07880.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	33.5	1.2e-10	70	183	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G++F+P+d++l+ +L+++v + + + +i+e+ i +v+ +++ + yfF+k+ k + +++ + t+ W+++ + +++ LPERR03G07880.2 70 LPRGVEFNPSDSDLL-WHLAAEVGNGQACRHPFIDEF-IKSVD--------ETDGRVSYFFHKNFKVCN--SENGKCTS---WQKSENPISIIL 148 699**********.789999999886554556664.44443........2345678*998875..45666666...******** PP NAM 95 kkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+ g+k+ +v+y + + ++++ tdW h+y++ LPERR03G07880.2 149 -DGNIQGCKEEFVLYayETDGNSPQVTDWRWHQYHI 183 .999******977667788889******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-19	63	201	IPR003441	NAC domain
PROSITE profile	PS51005	12.971	70	201	IPR003441	NAC domain
Pfam	PF02365	5.6E-7	71	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MAKEVAPPPS PSPCLDSDAE DVPLSVRRRR LLRPQAQRVD SKPPATERRD ASAEAVEGAG 60 GAAQQGWPGL PRGVEFNPSD SDLLWHLAAE VGNGQACRHP FIDEFIKSVD ETDGRVSYFF 120 HKNFKVCNSE NGKCTSWQKS ENPISIILDG NIQGCKEEFV LYAYETDGNS PQVTDWRWHQ 180 YHIKSTEKGE GELVVSKIFY KSENNNFKWA EKAHAQSALD ASATDDDSKE ELRLENHSSK 240 MVIESSILQG NENKQKQIQK ETCPDQSKLI PFNMADNMSI GNQINDHDEI KELDHMSLQE 300 RYRILLAEKH SCSAVVSFEQ CAIDGTENSC RPETSGLIPK RIHEGTPFRD GMHSMLQEIS 360 SGPPSIDSIG NDNNRMLLAE GLANNQQSQE SGCVSGLLSM SSPAVPPQCQ VVCSHDLLVN 420 GNTLIYSGEP SSSLTPTFGD ESIQLKGTED RTFLVDVKLE PVLEGNSSHV EGLLPSLRIK 480 NEVTGNELPL IICGLTSMNT AELTAKKKNT VNHDGALAYC SQKRKGRKTV RNPSEKTLEE 540 CSDRNGEDTT YFSRRKRRRK TATDSIETAL EEDAPGLLQI LIDRGILVNE IKLYGVEEDD 600 DMVPDCTESD FQDLENVITK LFPQRTSLLK LAARQVKGEK AIYCLTCLIS LIEQSRYLQF 660 RDCPVEWGWC RDLQSFIFIF KSHNRIVLER PEYGYATYFF EIVKSLPIEW QIQRLVTAMK 720 LSGCGRTALI ENKPLVVGED LTEGEARVLE EYGWLPNSGL GTMLNYRDRV VHDRWNEKSV 780 TDWRTKIGKL LMSGYSEGHL VLSHIPTKVG KLEEDTEIRA TGSSYQPSLR STVPNLAAVR 840 GMKISRLMIP GRMRK

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MAKEVAPPPS PSPCLDSDAE DVPLSVRRRR LLRPQAQRVD SKPPATERRD ASAEAVEGAG  60
GAAQQGWPGL PRGVEFNPSD SDLLWHLAAE VGNGQACRHP FIDEFIKSVD ETDGRVSYFF  120
HKNFKVCNSE NGKCTSWQKS ENPISIILDG NIQGCKEEFV LYAYETDGNS PQVTDWRWHQ  180
YHIKSTEKGE GELVVSKIFY KSENNNFKWA EKAHAQSALD ASATDDDSKE ELRLENHSSK  240
MVIESSILQG NENKQKQIQK ETCPDQSKLI PFNMADNMSI GNQINDHDEI KELDHMSLQE  300
RYRILLAEKH SCSAVVSFEQ CAIDGTENSC RPETSGLIPK RIHEGTPFRD GMHSMLQEIS  360
SGPPSIDSIG NDNNRMLLAE GLANNQQSQE SGCVSGLLSM SSPAVPPQCQ VVCSHDLLVN  420
GNTLIYSGEP SSSLTPTFGD ESIQLKGTED RTFLVDVKLE PVLEGNSSHV EGLLPSLRIK  480
NEVTGNELPL IICGLTSMNT AELTAKKKNT VNHDGALAYC SQKRKGRKTV RNPSEKTLEE  540
CSDRNGEDTT YFSRRKRRRK TATDSIETAL EEDAPGLLQI LIDRGILVNE IKLYGVEEDD  600
DMVPDCTESD FQDLENVITK LFPQRTSLLK LAARQVKGEK AIYCLTCLIS LIEQSRYLQF  660
RDCPVEWGWC RDLQSFIFIF KSHNRIVLER PEYGYATYFF EIVKSLPIEW QIQRLVTAMK  720
LSGCGRTALI ENKPLVVGED LTEGEARVLE EYGWLPNSGL GTMLNYRDRV VHDRWNEKSV  780
TDWRTKIGKL LMSGYSEGHL VLSHIPTKVG KLEEDTEIRA TGSSYQPSLR STVPNLAAVR  840
GMKISRLMIP GRMRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	553	559	RRKRRRK
2	554	558	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G07880.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105283	0.0	AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632079.1	0.0	uncharacterized protein LOC4332096
TrEMBL	A0A0D9VRB9	0.0	A0A0D9VRB9_9ORYZ; Uncharacterized protein
STRING	LPERR03G07880.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7479	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	2e-27	NAC family protein