 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR03G05830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 289aa MW: 31743.7 Da PI: 4.3299 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR03G05830.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.9 | 2e-19 | 57 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le+ Fe +++++ ++++++A+ lgL+ rqV vWFqNrRa++k
LPERR03G05830.1 57 KRRLAVEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 109
457889**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 129.6 | 1.2e-41 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eqv++LE+sFe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d+++L++++dal+++ ++L++++++L++e++e
LPERR03G05830.1 55 EKKRRLAVEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFASLRARHDALRSDCDALRRDKDALAAEIRE 147
69**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MYTNFAGEKQ VFAEENSLLA ATMEQQDEAG VEVDDDGDDE DEDMARPSSL CGLGEKKRRL 60
AVEQVRALER SFETDNKLDP DRKARIARDL GLQPRQVAVW FQNRRARWKT KQLERDFASL 120
RARHDALRSD CDALRRDKDA LAAEIRELRE KLLAKPPSAA VSVKAEAGSD ANVAVGDSGA 180
TTVCKDGGSS DDSDTSVVVN DEQQQEEPGF VGFGASSFLV DPKWHGAYSY ESYKVGGYGF 240
TEEWLAASGE IGNDEVAASF FSDEHASSNL INFGWCASGN EGWDLGVRL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 103 | 111 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK060119 | 1e-136 | AK060119.1 Oryza sativa Japonica Group cDNA clone:006-308-F01, full insert sequence. |
| GenBank | AK101522 | 1e-136 | AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence. |
| GenBank | AK101601 | 1e-136 | AK101601.1 Oryza sativa Japonica Group cDNA clone:J033051J21, full insert sequence. |
| GenBank | AK105644 | 1e-136 | AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence. |
| GenBank | AY554032 | 1e-136 | AY554032.1 Oryza sativa (japonica cultivar-group) clone R10191 Hox13 (hox13) mRNA, partial cds. |
| GenBank | CT831039 | 1e-136 | CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence. |
