PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G05830.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 31743.7 Da PI: 4.3299

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G05830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	57	109	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++++ ++++++A+ lgL+ rqV vWFqNrRa++k LPERR03G05830.1 57 KRRLAVEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 109 457889**********************************************9 PP
2	HD-ZIP_I/II	129.6	1.2e-41	55	147	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE+sFe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d+++L++++dal+++ ++L++++++L++e++e LPERR03G05830.1 55 EKKRRLAVEQVRALERSFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFASLRARHDALRSDCDALRRDKDALAAEIRE 147 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.35E-19	48	113	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-19	54	115	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.649	55	111	IPR001356	Homeobox domain
CDD	cd00086	3.08E-18	56	112	No hit	No description
Pfam	PF00046	1.2E-16	57	109	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-20	63	110	IPR009057	Homeodomain-like
PRINTS	PR00031	2.5E-5	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.5E-5	91	107	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.3E-15	111	152	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MYTNFAGEKQ VFAEENSLLA ATMEQQDEAG VEVDDDGDDE DEDMARPSSL CGLGEKKRRL 60 AVEQVRALER SFETDNKLDP DRKARIARDL GLQPRQVAVW FQNRRARWKT KQLERDFASL 120 RARHDALRSD CDALRRDKDA LAAEIRELRE KLLAKPPSAA VSVKAEAGSD ANVAVGDSGA 180 TTVCKDGGSS DDSDTSVVVN DEQQQEEPGF VGFGASSFLV DPKWHGAYSY ESYKVGGYGF 240 TEEWLAASGE IGNDEVAASF FSDEHASSNL INFGWCASGN EGWDLGVRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	111	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G05830.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060119	1e-136	AK060119.1 Oryza sativa Japonica Group cDNA clone:006-308-F01, full insert sequence.
GenBank	AK101522	1e-136	AK101522.1 Oryza sativa Japonica Group cDNA clone:J033046N04, full insert sequence.
GenBank	AK101601	1e-136	AK101601.1 Oryza sativa Japonica Group cDNA clone:J033051J21, full insert sequence.
GenBank	AK105644	1e-136	AK105644.1 Oryza sativa Japonica Group cDNA clone:001-200-F05, full insert sequence.
GenBank	AY554032	1e-136	AY554032.1 Oryza sativa (japonica cultivar-group) clone R10191 Hox13 (hox13) mRNA, partial cds.
GenBank	CT831039	1e-136	CT831039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA023E12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649529.1	1e-119	PREDICTED: homeobox-leucine zipper protein HOX13-like
Swissprot	Q10QP3	1e-105	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A0D9VQI8	0.0	A0A0D9VQI8_9ORYZ; Uncharacterized protein
STRING	LPERR03G05830.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.2	3e-35	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]