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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G05820.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 315aa MW: 33970.4 Da PI: 5.9845 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G05820.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 46.8 | 5.4e-15 | 93 | 144 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P + ++++ + a+i+ A++Y+k+L+
LPERR03G05820.1 93 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YAQRGDQASIVGGAINYVKELE 144
79****************************...*******************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MALEAVVFPQ GHFGYGCGKD YAAMPWCGGF GEFCGVDEWD VQVGSVDEWD VASKDHSDDS 60 TEVKAPAPVV GGGGRRKRRR TKVVKNKEEI ECQRMTHIAV ERNRRRQMNE YLAVLRSLMP 120 ASYAQRGDQA SIVGGAINYV KELEQLLQSL EVQKSLKNGT VAGDSSSSPF AGFFSFPQYS 180 TSSRSGGCSS AGSSGNNASS VVMDDTAAGS VVDSGRPAAA IADIEVTMVE GHASLKVLAR 240 RRPKQLLKLV VGLQQLRIPP LHLNVTTIDA MVLYSFSLKV EDDSKMGSVE DIATAVHEIL 300 GRIQQQEEEA VLAIS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 75 | 79 | RKRRR |
2 | 75 | 80 | RKRRRT |
3 | 93 | 104 | RMTHIAVERNRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107555 | 0.0 | AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence. |
GenBank | HQ858866 | 0.0 | HQ858866.1 Oryza sativa Japonica Group isolate UT1675 bHLH transcription factor mRNA, partial cds. |