PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 315aa    MW: 33970.4 Da    PI: 5.9845
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.4e-1593144155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A++Y+k+L+
  LPERR03G05820.1  93 QRMTHIAVERNRRRQMNEYLAVLRSLMPAS---YAQRGDQASIVGGAINYVKELE 144
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-1491148No hitNo description
PROSITE profilePS5088815.92992143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1293144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1493155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1793157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1198149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGKD YAAMPWCGGF GEFCGVDEWD VQVGSVDEWD VASKDHSDDS  60
TEVKAPAPVV GGGGRRKRRR TKVVKNKEEI ECQRMTHIAV ERNRRRQMNE YLAVLRSLMP  120
ASYAQRGDQA SIVGGAINYV KELEQLLQSL EVQKSLKNGT VAGDSSSSPF AGFFSFPQYS  180
TSSRSGGCSS AGSSGNNASS VVMDDTAAGS VVDSGRPAAA IADIEVTMVE GHASLKVLAR  240
RRPKQLLKLV VGLQQLRIPP LHLNVTTIDA MVLYSFSLKV EDDSKMGSVE DIATAVHEIL  300
GRIQQQEEEA VLAIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579RKRRR
27580RKRRRT
393104RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
GenBankHQ8588660.0HQ858866.1 Oryza sativa Japonica Group isolate UT1675 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.11e-159transcription factor bHLH96
SwissprotQ9C7T44e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D9VQI70.0A0A0D9VQI7_9ORYZ; Uncharacterized protein
STRINGLPERR03G05820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-28bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]