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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G05400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 35258.1 Da PI: 5.5117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 112 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + +r++lg+f t+eeAa+a++ +++l+g LPERR03G05400.1 112 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 161 69*******.**********72....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-32 | 111 | 170 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-12 | 112 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-38 | 112 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.446 | 112 | 169 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-22 | 112 | 170 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.31E-28 | 112 | 168 | No hit | No description |
PRINTS | PR00367 | 4.3E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MCGGAILAEF IPPPSRAAAA SKRVTAGHLW PAGCKNAGAG KSSKKQRHQR SFADIDDFEA 60 AFEQFDDDFD LDDVDDDEVD FVFTSKSPVA AGYDEGKTAR TAARKKKKGR RHFRGIRQRP 120 WGKWAAEIRD PHKGTRVWLG TFNTPEEAAR AYDVEARRLR GSKAKVNFPT TAAPAAARPR 180 RAAAKKQQQP PAMAGMKREL SPPETAAVPF FAGSFVDLTT TAAVAPPPPA SSFTDSFATS 240 ESGESLAKKM RTSDDSSEGS VGGGETMGFA DDLEFDPFML FQLPYSDGYE SIDSLFAGGD 300 AGSANNNDMS SVNLWSFDEF PIDGSAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 111 | 169 | 4 | 63 | ATERF1 |
3gcc_A | 6e-21 | 111 | 169 | 4 | 63 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G05400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630585.1 | 1e-126 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0D9VQC2 | 0.0 | A0A0D9VQC2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G05400.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 6e-29 | ERF family protein |