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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G03610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 1521aa MW: 166992 Da PI: 6.0227 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 1411 | 1436 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C C++ F ++ +L+ H+r+ + LPERR03G03610.1 1411 FHCDieFCDMAFETRAELRAHMRNiC 1436 6799999****************877 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00048 | 1436 | 1458 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+Fs++ +LkrH+ +H LPERR03G03610.1 1436 CTdeSCGKRFSSHKYLKRHQCVH 1458 77778***************998 PP | |||||||
3 | zf-C2H2 | 13.6 | 0.0002 | 1494 | 1520 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ dCg+sF+ s++ rH ++ H LPERR03G03610.1 1494 YKCSapDCGQSFRYVSDYSRHRKKfnH 1520 99********************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 9.1E-13 | 34 | 75 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.605 | 35 | 76 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.4E-13 | 36 | 69 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 1.37E-27 | 214 | 395 | No hit | No description |
SMART | SM00558 | 2.5E-47 | 230 | 399 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 34.64 | 233 | 399 | IPR003347 | JmjC domain |
Pfam | PF02373 | 1.3E-36 | 263 | 382 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 1410 | 1433 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 10 | 1411 | 1433 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.006 | 1434 | 1463 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3 | 1434 | 1458 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.37E-6 | 1436 | 1470 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 1436 | 1458 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-7 | 1440 | 1464 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.02E-10 | 1458 | 1514 | No hit | No description |
PROSITE profile | PS50157 | 11.967 | 1464 | 1493 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.6E-4 | 1464 | 1488 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.1E-11 | 1465 | 1488 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1466 | 1488 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-10 | 1489 | 1516 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.365 | 1494 | 1521 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 1494 | 1520 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1496 | 1520 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0045814 | Biological Process | negative regulation of gene expression, epigenetic | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0032452 | Molecular Function | histone demethylase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1521 aa Download sequence Send to blast |
MPPQPPPPAA ASASSAAATA PDPAVPAWLR GLPRAPEYRP TESEFADPIA FLSRVEREAA 60 AYGICKVIPP HPRPSRRFVF AHLNRSLVSS CDAPVPTTSD SSNPSSSTPS ASAAVFTTRH 120 QELGTPRRGR PTPQVLKQVW QSGERYTLDQ FEAKSRAFSK THLAGVHEPS ALTVESLFWK 180 ASTDRPIYIE YANDVPGSGF AAPVQLQRQR KKRKRESSPM DEWEKSAGWR LSNSPWNLQA 240 IARAPGSLTR FMPDDVPGVT SPMVYIGMLF SWFAWHVEDH DLHSLNFLHT GAPKTWYAVP 300 GDRAVEIEEV IRLHGYGGNP DRIASLAVLG EKTTLMSPEV LIDNGVPCCR LVQYPGEFVV 360 TFPRAYHVGF SHGFNCGEAA NFATPQWLKF AKEAAVRRAV MNYLPMLSHQ QLLYLLAVSF 420 ISRNPRELLS GIRTSRLRDR KKEERELLVK REFLQDMISE NGLLCSFMEK KSVNNVVLWE 480 PDLLPSLTSL HSCSSSSKAP EKKGEEGPRI EFTQSSSKDN SLSHGTECMT STQSKGVSMD 540 RQDSKHAPDG EKVDTDDEDG LPFDLSIDSG SLTCVACGIL GFPFMAILQP SRKALEEISV 600 VDKEKYKLSC EKENCSNVLP CSPNDGVSGC PLIADRLSSP VENANLSHQN VNPIRSGISL 660 MGNELDGTVR KHSGISCSCS NENTIHPYGD TETPEKKLLS DSPGSELNKQ KGRGDVNIQA 720 VEGSEETISW NTCCTFARPR IFCLQHALEI EELLASKGGV HTLIICHADY VKLKALAISI 780 AEEIEFQFDY KDVALANASK SDLQLINISI DDEGYEEEGT DWTSRMGLNL KHCSKIRKEA 840 SGSQKQPPLS FWGLFSKPSP ISIVPNLKWL CRKARTPYKV VGYASSADVA ATPDKVKPAV 900 TKTQTETSAN AHENAKSEQT LQQGSVPQES NDVADMCMRP KQNDQDGHGL INIPVAEYPM 960 MHQVSEGAVN VNESDDPTCS FDSQDSPTTA SVSVAELTGE QCNVETTELS SLTTPVQQLL 1020 DNELIAEGGS MTLGSNHEYL ESDNATSACQ DEQLQAHQDQ ETMVLCNNPN TELVRPCLVK 1080 GATFAGELQG GTASSTLENE DSCGNTFYCS DTVLKKSKSD TDDQPETCGR SAVLVTPKLS 1140 CDQMISSTDG SCSLAMDCTV SIDAAFSSEK LSMTHDLMNN ELQAVHNSKA LINSVKTTQA 1200 EGSLTDLKAT NLNYIHTTQL PQESPRSDVI IAEGTQSASD TVISGQNGTS IHAESNSFDI 1260 LLGVLADESK VASGKDEVGK ASLTLMTLTS NDHTTDDATQ GEIAEITGSS GNIALLNKDP 1320 TGFCASDIVS RSIGSSNRTN IICYARRKHK RKCGPELSIN SSQSYVSFAR SPCESLRPRT 1380 RPAIVEDMTD ETKTVEASAT KKSKRTKVGT FHCDIEFCDM AFETRAELRA HMRNICTDES 1440 CGKRFSSHKY LKRHQCVHRD ERPFKCPWDG CPMTFKWLWA QTEHIRVHTG ERPYKCSAPD 1500 CGQSFRYVSD YSRHRKKFNH Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 6e-75 | 28 | 413 | 8 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 6e-75 | 28 | 413 | 8 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 209 | 214 | RKKRKR |
2 | 1345 | 1351 | RRKHKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G03610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110927 | 0.0 | AK110927.1 Oryza sativa Japonica Group cDNA clone:002-173-D09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630480.1 | 0.0 | lysine-specific demethylase SE14-like isoform X1 | ||||
Swissprot | Q10RP4 | 0.0 | SE14_ORYSJ; Lysine-specific demethylase SE14 | ||||
TrEMBL | A0A0D9VPM4 | 0.0 | A0A0D9VPM4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G03610.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9939 | 34 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |