PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ERF

Protein Properties

Length: 137aa MW: 14749.2 Da PI: 5.3558

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G03540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2e-20	19	70	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ +++g LPERR03G03540.1 19 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAMKG 70 67******.******8333..4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.2E-15	19	70	IPR001471	AP2/ERF domain
CDD	cd00018	8.11E-30	19	78	No hit	No description
SuperFamily	SSF54171	1.18E-23	19	79	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.302	20	78	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-36	20	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-32	20	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-12	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-12	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MEDDKNNNSK EEGKKSTSSS YRGVRKRPWG KFAAEIRDPE RGGARVWLGT FDTAEEAARA 60 YDRAAFAMKG ATAVLNFPGE MSASAGAAAT GSASSTSSSR AAAAPWGSRG DKVELECLDD 120 KVLDDLLAED NYRDKKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-29	13	122	7	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G03540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC229755	3e-81	AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630244.1	5e-52	ethylene-responsive transcription factor ERF096
Swissprot	Q9LTC5	6e-33	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0D9VPL7	5e-93	A0A0D9VPL7_9ORYZ; Uncharacterized protein
STRING	LPERR03G03540.1	9e-94	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	9e-21	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]