PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G03540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 137aa    MW: 14749.2 Da    PI: 5.3558
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G03540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-201970155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ +++g
  LPERR03G03540.1 19 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAMKG 70
                     67********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-151970IPR001471AP2/ERF domain
CDDcd000188.11E-301978No hitNo description
SuperFamilySSF541711.18E-231979IPR016177DNA-binding domain
PROSITE profilePS5103224.3022078IPR001471AP2/ERF domain
SMARTSM003802.9E-362084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-322078IPR001471AP2/ERF domain
PRINTSPR003674.5E-122132IPR001471AP2/ERF domain
PRINTSPR003674.5E-124460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEDDKNNNSK EEGKKSTSSS YRGVRKRPWG KFAAEIRDPE RGGARVWLGT FDTAEEAARA  60
YDRAAFAMKG ATAVLNFPGE MSASAGAAAT GSASSTSSSR AAAAPWGSRG DKVELECLDD  120
KVLDDLLAED NYRDKKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-29131227114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G03540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297553e-81AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630244.15e-52ethylene-responsive transcription factor ERF096
SwissprotQ9LTC56e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D9VPL75e-93A0A0D9VPL7_9ORYZ; Uncharacterized protein
STRINGLPERR03G03540.19e-94(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.19e-21ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]