![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR03G03540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 14749.2 Da PI: 5.3558 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 19 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr ++ +g+++AeIrdp + +r++lg+f+taeeAa+a+++a+ +++g LPERR03G03540.1 19 SSYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAMKG 70 67********.**********8333..4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-15 | 19 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.11E-30 | 19 | 78 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-23 | 19 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.302 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-36 | 20 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 20 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-12 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-12 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MEDDKNNNSK EEGKKSTSSS YRGVRKRPWG KFAAEIRDPE RGGARVWLGT FDTAEEAARA 60 YDRAAFAMKG ATAVLNFPGE MSASAGAAAT GSASSTSSSR AAAAPWGSRG DKVELECLDD 120 KVLDDLLAED NYRDKKY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-29 | 13 | 122 | 7 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR03G03540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC229755 | 3e-81 | AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630244.1 | 5e-52 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 6e-33 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0D9VPL7 | 5e-93 | A0A0D9VPL7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G03540.1 | 9e-94 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23230.1 | 9e-21 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|