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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G02580.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 378aa MW: 40655.6 Da PI: 4.9713 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G02580.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.9 | 6.5e-12 | 202 | 244 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
LPERR03G02580.1 202 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 244
79*********************66......****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MELDEESFLD ELMSLRREGS SPWQPAPYPG SGAGAGGGMM MSDLLFYGGE RGAGLEASPF 60 HELTPMPPPP PPHQHPQQHE EFNFDCLSEV CNPYRLVPSE AAITSQTQQQ QQQQQQKQLT 120 PLRLGDAMVA EEETSGGGGG DKPAAFHGGA RGSSSSPTFM FGGGGGESSE MMAGGGGGIR 180 CGGVGGVHPR SKLHGTPSKN LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY 240 VKELTERIKS LEEEIGATPE ELDLLNTMKD SSSANSNEML VRNSTKFDVE RRGSGSTRIE 300 ICCPANPGVL LSTVSALEVL GLEIEQCVVS CFSDFGMQAS CLQEDGKRQV ISTDEIKQTL 360 FRSAGYGGRN CSSGFVLS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 203 | 210 | ERRRRKRL |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK060029 | 0.0 | AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]
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