PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01710.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 552aa    MW: 58892.8 Da    PI: 6.9918
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-093203571954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  LPERR03G01710.1 320 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 357
                      664459******************************88 PP
2BELL85.46.7e-28183252372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       elq+ k kL  +leeVd+rY++y+eq++ v + Feavag  +a+ Yt++A ++iSrhFr+L+d +++q+
  LPERR03G01710.1 183 LELQRLKDKLYIMLEEVDRRYRRYCEQMRSVSGGFEAVAGERAAAAYTAVAARTISRHFRSLRDGVVSQL 252
                      58999**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-36128250IPR006563POX domain
PfamPF075265.6E-37134248IPR006563POX domain
PROSITE profilePS5007111.985298361IPR001356Homeobox domain
SMARTSM003896.6E-9301365IPR001356Homeobox domain
CDDcd000863.33E-12301362No hitNo description
SuperFamilySSF466891.8E-17302368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28304367IPR009057Homeodomain-like
PfamPF059207.1E-18318357IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAADGAT ASSVTTLMPT MVDDTAPELY GLQSGIELLG MIPGATTKLA  60
DAANDGGAAT MRFVAEHHHH HNHHNRLSQA PLSLSLSQIA GAARQHPHLA PTAGAAPWMQ  120
HDAPPTPHGV AWQLRGSRFL VPAQQVLQEF CSLPVDTTKR TKPPTQQEDG SSASAQIQAM  180
EALELQRLKD KLYIMLEEVD RRYRRYCEQM RSVSGGFEAV AGERAAAAYT AVAARTISRH  240
FRSLRDGVVS QLQAVRKALG EKDVRIAGMT RGETPRLKVI DQCVRHHKSL GGAGGMDGHP  300
WRPQRGLPER AVTILRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK  360
PMVEEMYVEE MKDGQDAGNG STVSGGQGIS PNTKQAAVGD GDGDGEQKPT TAQLRHHDAT  420
GSLASVVNVD VVARDNFGIM GHLDFDAYGD NQHNQHAAFV GGGGGGVSLT LGLQHHGSRG  480
VGDGGGVNIA FGAPASAAAH GGAGFVYPGE QMVDVVQFMD GGGGGGDASH GGQEQRYRSL  540
SAGFHLLRDL AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17307365159Homeobox protein Meis2
5bng_B2e-17307365159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212070.0AK121207.1 Oryza sativa Japonica Group cDNA clone:J023088C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628192.10.0homeobox protein BEL1 homolog
TrEMBLA0A0D9VNW10.0A0A0D9VNW1_9ORYZ; Uncharacterized protein
STRINGLPERR03G01710.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.15e-80TALE family protein