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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G01610.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 309aa MW: 32485 Da PI: 8.0745 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G01610.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.7 | 2.4e-14 | 122 | 173 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+
LPERR03G01610.1 122 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 173
79****************************...9*******************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MERLQLQGPI GSLWAAAAAA EQAAASAGAG GAQMPFLALL HGAMEADAGG DMRKRNGMFS 60 CPCPTVAADI DLLESCVTQA AAPPVDAAPA SRAERRRKRP RQRPRAAPPP EKRKKPEEAE 120 SQRMTHIAVE RNRRRLMNDH LASLRSLIPS SYIPRGDQAT VVGGAIDYVK QLEQQLVALQ 180 AAAAERHGVG VGGVVGTAAS DGVFVSPQYT SYSESRGGGG GVDVEATAAV GGHVRVSVAG 240 RRWNGRLVRA VAAMEELRLT VLHLAVTSVG HDAVVYCFNL KMEEGCEVAT ADEVATVVHQ 300 IFAYAGACC
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 94 | 104 | RRRKRPRQRPR |
2 | 96 | 102 | RKRPRQR |
3 | 96 | 114 | RKRPRQRPRAAPPPEKRKK |
4 | 122 | 133 | RMTHIAVERNRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK355470 | 0.0 | AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13. |