PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G01610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 309aa    MW: 32485 Da    PI: 8.0745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G01610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14122173155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  LPERR03G01610.1 122 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 173
                      79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-12120173No hitNo description
Gene3DG3DSA:4.10.280.102.2E-14120176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MERLQLQGPI GSLWAAAAAA EQAAASAGAG GAQMPFLALL HGAMEADAGG DMRKRNGMFS  60
CPCPTVAADI DLLESCVTQA AAPPVDAAPA SRAERRRKRP RQRPRAAPPP EKRKKPEEAE  120
SQRMTHIAVE RNRRRLMNDH LASLRSLIPS SYIPRGDQAT VVGGAIDYVK QLEQQLVALQ  180
AAAAERHGVG VGGVVGTAAS DGVFVSPQYT SYSESRGGGG GVDVEATAAV GGHVRVSVAG  240
RRWNGRLVRA VAAMEELRLT VLHLAVTSVG HDAVVYCFNL KMEEGCEVAT ADEVATVVHQ  300
IFAYAGACC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194104RRRKRPRQRPR
296102RKRPRQR
396114RKRPRQRPRAAPPPEKRKK
4122133RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G01610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554700.0AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629439.21e-134transcription factor bHLH57
TrEMBLA0A0D9VNU90.0A0A0D9VNU9_9ORYZ; Uncharacterized protein
STRINGLPERR03G01610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-38bHLH family protein