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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G01310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 20677.9 Da PI: 4.4621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.2 | 6.2e-16 | 24 | 74 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r + g+Wv+eIr+p gk+ r++lg++ ++e+Aa+a++ a+++l+g+ LPERR03G01310.1 24 PVYRGIRLR--GGKWVSEIREP---GKSSRIWLGTYPSPEMAAAAYDVAALALRGA 74 68****976..5*********8...557*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-10 | 24 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.915 | 25 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-28 | 25 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 25 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-26 | 25 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.15E-15 | 26 | 81 | No hit | No description |
PRINTS | PR00367 | 2.9E-6 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDQEESLGVE PLTGRRVRAD TRHPVYRGIR LRGGKWVSEI REPGKSSRIW LGTYPSPEMA 60 AAAYDVAALA LRGADAALNF PGLATSSSRR PAPASASPDD IRAAAAAAAA SVIGSGNWDN 120 ARVDASTSRA EPEMDQKRVV DEDDVFEMPR LLVSMAEGLM MSPPRLSPAT DGGGGGVSPE 180 DDVDEEDGMS LWSHT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G01310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236527 | 1e-72 | AC236527.1 Oryza minuta clone OM__Ba0059E04, complete sequence. | |||
GenBank | AC236542 | 1e-72 | AC236542.1 Oryza minuta clone OM__Ba0185B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880266.1 | 3e-82 | ethylene-responsive transcription factor ERF027 | ||||
Refseq | XP_025880267.1 | 3e-82 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9FJ90 | 8e-37 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A0D9VNQ4 | 1e-135 | A0A0D9VNQ4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G01310.1 | 1e-135 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-24 | ERF family protein |
Publications ? help Back to Top | |||
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