PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Trihelix | ||||||||
Protein Properties | Length: 568aa MW: 61607.2 Da PI: 9.6177 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.6 | 1.1e-30 | 72 | 156 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++r++k+C+ek+en+ k+yk++k+g+ +r ++ +++++f++lea LPERR03G01010.1 72 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRKLAEMGYKRNAKKCREKFENVDKYYKRTKDGRAGR--GDGKNYRFFTELEA 156 8********************************************************************97..77889******985 PP | |||||||
2 | trihelix | 109.3 | 2.5e-34 | 394 | 479 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+eme r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a LPERR03G01010.1 394 RWPKAEVHALIQLRTEMEARYQDSGPKGPLWEDISAGMRRMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 479 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.022 | 69 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.0E-21 | 71 | 157 | No hit | No description |
CDD | cd12203 | 1.31E-27 | 71 | 136 | No hit | No description |
PROSITE profile | PS50090 | 6.655 | 71 | 129 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.271 | 387 | 451 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0091 | 391 | 453 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-4 | 392 | 450 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.0E-23 | 393 | 480 | No hit | No description |
CDD | cd12203 | 8.97E-30 | 394 | 458 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MQQQQQQQPG SMPPFSAAGT GEAAPSPISS RPPPPQPEQA ADEHQLGNGS SSLLEHDGMA 60 GGESAAGGGG NRWPRQETLA LLKIRSEMDA AFREAALKGP LWEEVSRKLA EMGYKRNAKK 120 CREKFENVDK YYKRTKDGRA GRGDGKNYRF FTELEALHGA ARPHPPPPPQ PAPRMSTIPA 180 PIPIIPTPII SAMDAAACVM TMDDVSFSSG SDTEETAEED GNNNNSHKRK RRHGGGDGKP 240 AMRMFEALMR QVMERQEAMQ QRLLEAIERR DQERMIREEA WRRQEIARLA RDQDALAHDR 300 AIAASRDAAV ISFIQRLTGQ SIPTAAAVIT PPPPPLQPTP VASAAPPHHH IMPMTPQPQL 360 QPPQSKESTA VAVIPDQAAA QQHETAAAAA SSSRWPKAEV HALIQLRTEM EARYQDSGPK 420 GPLWEDISAG MRRMGYSRSS KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYYHQLDAL 480 YRSKANANAV AAAGSPSTPA ITVLAPVPLS QSTPPPPHGE HGSNGNGING WPASAAAVGA 540 NNGGTQTKAS NGNGNGVVMD NNKVILFG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G01010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241800 | 1e-116 | AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628078.1 | 0.0 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0D9VNK7 | 0.0 | A0A0D9VNK7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G01010.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 4e-68 | Trihelix family protein |