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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G00950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C3H | ||||||||
Protein Properties | Length: 1616aa MW: 177678 Da PI: 5.8112 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.3e-07 | 1595 | 1616 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+ f+++G+C+ G++C++ H++ LPERR03G00950.1 1595 VCK-FHENGYCRKGASCNYLHPQ 1616 588.9999*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.75E-8 | 107 | 158 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.8E-8 | 108 | 165 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00249 | 1.6E-6 | 113 | 159 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15568 | 9.88E-20 | 113 | 158 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 114 | 174 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 0.0012 | 197 | 271 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 2.83E-14 | 219 | 268 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 2.9E-13 | 220 | 266 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 8.2E-18 | 220 | 273 | IPR003121 | SWIB/MDM2 domain |
PROSITE profile | PS51360 | 32.568 | 327 | 459 | IPR004343 | Plus-3 domain |
SMART | SM00719 | 9.9E-44 | 327 | 436 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 9.68E-34 | 327 | 453 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 1.0E-25 | 332 | 435 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 4.45E-15 | 584 | 644 | IPR003169 | GYF domain |
PROSITE profile | PS50829 | 14.435 | 591 | 643 | IPR003169 | GYF domain |
SMART | SM00444 | 1.4E-12 | 592 | 645 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 1.5E-14 | 593 | 644 | IPR003169 | GYF domain |
Pfam | PF02213 | 4.5E-9 | 594 | 633 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 14.042 | 1590 | 1616 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.65E-5 | 1592 | 1615 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 1592 | 1616 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 1595 | 1616 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034968 | Biological Process | histone lysine methylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1616 aa Download sequence Send to blast |
MVGAAGAAAE MLSPAEADWP PELRLPQPPP PPQSQPAIGM DDSQFLGSIM ALPAQTLPHH 60 PQATAAAAEA QAVVGVKRRR GRPPKKKDGA GTAAVVPAAA KAARGKVDEE EVVCFICFDG 120 GNLVVCDRRG CPKVYHPACI KRDEAFFQSR SKWNCGWHIC SSCEKAVHYM CYTCTYSLCK 180 VCIKQGKFFS VRGTKGFCDT CYTTILLIES KDEGGSKVLL LEYIKQNNLR DPQRKSQIIC 240 DSRLHRLFRK TRVAHFEMLK LLEMHFLVSE PSTVNDDNQG VVNPNSAQID HASGHNDMAA 300 KISPDRRRRM HRKMERESQA NPEDYAAIDM HNISLIYLRR SLMEDLIDDP TFSDKISGAF 360 VRIRISGLGQ KQDMYRLVKV VGTHNVSDKY SIGKKTTNLA LEIMNLNKKE IITMDTVSNQ 420 DFTEEECKRL RQSMKYNLIS RLKVGDIQEK AKVFQFVRVN DLINTPEERT RRINEVLDVH 480 VDSHMDPDYE STEEFGNVER NINWSRSDTF ASPIKVKHPN TSQKNYDATH HPRNLSKQNT 540 VRKSGAARNF ENSHSSIGMD VRNSGTNVKS TMCGTAPLSS SGVTVSNEEP EKVWHYKDPS 600 GNVQGPFTLL QLSKWTSYFP RDMRVWLTFE SEERSLLLTE VLSKQPKDFG QPASVTTSSK 660 STLADTGRNR NNQIVDLNKA PSPVGYSMLN SSETTAQSTK HSVLERESVN SLDDRLSLST 720 DSVPQKDTNT SNSQAMFRTK HSSSLPSPGS PHQQPDLHHD EVHGGHSGEW NNQHNSSERW 780 SPAMPQTSSS AQSDLESYHN QVHHYALSSQ VQHDSKNSLQ ARSGKNLNSR QDFSQKLPGQ 840 RITRDVPSPV FAWSPSESRT ASSQYEGSCL SSTTNLCSHD ELHSSIASAK AKSFAPATPV 900 EDRGSSSPSG MLSHSERAPI RSPQSAPSVS ASDTCKMEII NQQKTLEADI SNTSVNQSPQ 960 SKILPESSPD NEDTVREYRS PPPISESKGL SPQSRTTPES SPDNQDNQDT EHEDRSPLPI 1020 SESKVLYPQS RTPESSPDKE ATERPPPISE SKELYPQSRA TPISSPDKQD TECEYPSPPP 1080 IPESKELSPQ SRTIPESSPD NQDTEREYPS PPPIPENKEL SPHSKVLPES SPDNKDAEPE 1140 CPSPTPTPTP ESKEPSPQSK ILPEPSPDDQ DIKHEYPSPT VICKSKEVSP QSKILSECSL 1200 DNQDIEHEYP DPTLISESKE LAVDLSGSVS LAPEKIASDV GEHSSLAFMF SKSSPAGDGA 1260 LKSVSDIEKT LFDDEDSNIK EELYVESTDV IRGDMVVNPA SGVESIDMSE NLLESLIEQS 1320 CGSFYMDGAT ALENFLSGST KEEPQCSSPI ALSTCSSPIA LSPWGEPGYY EGDSVGSLWG 1380 IQDNDPINDI WPLSTQTPAL HYSSGSTAHF IDEVTVTHGD DGIVPRSTMP GEKVELPNSG 1440 VCMDWRLVEQ VNPEANDASV STINGSTGLV NSQPSANDGS NVDTARNTNH NTNLPLKHET 1500 AVPLSTGSGE ASRKQGCTTD MNVATSGEAL GGTKNWNRSA GNANRGSQRN HHRDRYSQIS 1560 ESWLLSSNYS RGRSDGFGTG GSSRSTPRGQ TQRGVCKFHE NGYCRKGASC NYLHPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2naa_A | 1e-12 | 109 | 180 | 4 | 72 | Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G00950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232894 | 0.0 | AC232894.1 Oryza officinalis clone OO__Ba0087M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630500.1 | 0.0 | zinc finger CCCH domain-containing protein 20 isoform X2 | ||||
TrEMBL | A0A0D9VNK0 | 0.0 | A0A0D9VNK0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G00950.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2709 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 1e-79 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |