PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G31790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 646aa    MW: 71191.5 Da    PI: 5.2328
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G31790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.6e-07114135426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C +f++ G C  GdrC F+H 
  LPERR02G31790.1 114 VPCYYFQK-GMCVKGDRCAFMHL 135
                      69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0191745IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2161746IPR000571Zinc finger, CCCH-type
PfamPF156632.2E-111872No hitNo description
PROSITE profilePS5010311.0284874IPR000571Zinc finger, CCCH-type
SMARTSM003562.55073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422110137IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5113134IPR000571Zinc finger, CCCH-type
PfamPF146081.3115134No hitNo description
Gene3DG3DSA:4.10.1000.108.8E-4115134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MDSAVRPPPV DDDEARRRRN TDCIYFLASP LTCKKGSECD YRHSDAARMN PRDCWYWFNG  60
NCANPKCSFR HPPLDGLVGA PTTPRASQQS APQVSVPPLA PVSNPASGTA KQGVPCYYFQ  120
KGMCVKGDRC AFMHLPQAAG SPAPQQTAKV FVLASVPHPQ MKNSWTKPNS SAQQNAPPAT  180
FDNPKDSAHN GKPALKPNLT NRAGHSSGIT HDKKSSSVPS GVTKNYRSPT SIGDELAENG  240
MEMGEFVREP SAGADDYAEQ SLREDRSSYR RTNGEQHIGM PRHTHGSYGF ERSQRSSAEK  300
LLSQSRFSQR ELPFTAENSD LRQRLLKQRR LNNPRPGQVS DRHNIYLEDE RHDHHHRRGE  360
EQATHDGVSS SRLRGRIKLP AETSSDRHGL QPDKERDRGP RSRLSPPNQT DLRGKLHDRL  420
KARPNEDVSS NTKGSLAKAN SGEDVDSLNF AGPKSLAELK AKKVAGSAGR HSIKSAGPSA  480
GPVRMTSEIV SVQDSSNPVA FEGPKPLNAI LKRKREADSG NATNSGSKQE EHSVGDEEGS  540
QNEFENIEDD IVGTNNEGEG NGEESFQPED DVVYDDSLSP ADDIAVEATD DASKELEEQQ  600
DLETAEEYDY EMDDVNAEEE NDYQEYEDDD LEDDDDFARK VGVMIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G31790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626088.10.0zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0D9VN320.0A0A0D9VN32_9ORYZ; Uncharacterized protein
STRINGLPERR02G31790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]