PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G28430.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRF
Protein Properties Length: 398aa    MW: 43598.3 Da    PI: 7.8182
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G28430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.7e-2594137144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  LPERR02G28430.1  94 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 137
                      79***************************************998 PP
2QLQ59.69.1e-212257237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++
  LPERR02G28430.1 22 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 57
                     9********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-112157IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.8012257IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-152255IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.57394138IPR014977WRC domain
PfamPF088792.1E-2095137IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMMMSGRPSG GGGGAGAVGR YPFTASQWQE LEHQALIYKY MASGTPIPSD LILPLRRSFL  60
LDSALATSPS LAFPPQPSLG WGCFGMGFGR KAEDPEPGRC RRTDGKKWRC SKEAYPDSKY  120
CEKHMHRGKN RSRKPVEMSL ATPPTPPPSN TSSAAASNAS AAATTTTSSP APPSYNHRTD  180
ASPYHQALYG GGGHYAAAAR APAATFHHAQ VSPFHLHLDT THPHPPPSYY SMDHKDQYAA  240
YGHAAKEIHG GGEHVFFSDG GNDRESHHNH HQWQFKQLGM QSKPNTTTLF PGAGYGGGNN  300
NSTAASPYPI DLSKEDDDEK ERRQQQQQHC FLLGADLRLE KPSEAQKPLR HFFDEWPHEK  360
SSKGSWMGLD GETQLSMSIP MATTDLPITT TSRYHNDD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G28430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647996.10.0PREDICTED: growth-regulating factor 1
SwissprotQ6AWY80.0GRF1_ORYSJ; Growth-regulating factor 1
TrEMBLA0A0D9VLR50.0A0A0D9VLR5_9ORYZ; Uncharacterized protein
STRINGLPERR02G28430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57413652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-51growth-regulating factor 5