PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G27970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GeBP | ||||||||
Protein Properties | Length: 320aa MW: 34685.3 Da PI: 4.5818 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 51.5 | 2.8e-16 | 136 | 228 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs.ksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +fqr+ws eD++ +L +l + ++g+ ida+++++ +s++ v + l Ki LK+++ k+ ksg+ +++hd+ if+++k+ LPERR02G27970.1 136 AFQRVWSMEDDVRILEALAAHRREHGA--LPQIDALVSTLAGSLDHSVVdAKGLRGKISTLKRRYDAAAKR-KSGEL--PTNSHDRRIFDICKI 224 69*******************999995..57899**********98865167899**************99.66665..5799*********** PP DUF573 95 iWgs 98 iWgs LPERR02G27970.1 225 IWGS 228 **95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 3.66E-6 | 103 | 113 | No hit | No description |
Pfam | PF04504 | 6.1E-20 | 137 | 227 | IPR007592 | Protein of unknown function DUF573 |
SuperFamily | SSF101447 | 3.66E-6 | 213 | 232 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MAPKRSAPPP PPPVASSDET ASGSDSDESE EEVEAPAALR APVVSNKGEE SESEEEEESE 60 EEGEDDMVRS SATQKRDPPP QNREEDESSG DEEGESSDSD KAPPPPPPPP PPPNPAPKQV 120 AAEGNGANIS SPKKPAFQRV WSMEDDVRIL EALAAHRREH GALPQIDALV STLAGSLDHS 180 VVDAKGLRGK ISTLKRRYDA AAKRKSGELP TNSHDRRIFD ICKIIWGSSD NAANVTTAGR 240 AAGREFSEMC ELYPHLGEEV KALEAAHPGL FKRDFGRLDD DKARALDMKV KKQRIAEITL 300 ELRRGDLTKE VTKVLAELVQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G27970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627254.1 | 3e-93 | probable tyrosine-protein phosphatase DSP2 | ||||
TrEMBL | A0A0D9VLK1 | 0.0 | A0A0D9VLK1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G27970.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66420.1 | 5e-10 | DNA-binding storekeeper protein-related transcriptional regulator |