PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G27220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 306aa    MW: 32997.4 Da    PI: 6.7172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G27220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.3e-15113164155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +rr+h ++Er+RR+++N+ +++Lr+l+P++   ++++ + a+i+  A++++k+L+
  LPERR02G27220.1 113 QRRNHIAVERNRRRQMNDYLATLRSLMPPS---YAQRGDQASIVAGAINFVKELE 164
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17111178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-15111168No hitNo description
PROSITE profilePS5088816.05112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14113176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MALEAVVFPQ EHLSCASLYA PAPSLGLSCG VGDMDEFEEN GGGVVLQEEA AQGGDWVNAE  60
EFWDERPHRL VSPSRTLTTT TMVGGHAKST AAAARRRRRR PKVVKNREEA ESQRRNHIAV  120
ERNRRRQMND YLATLRSLMP PSYAQRGDQA SIVAGAINFV KELEQLLQSL EAQKRHAVAV  180
AGAPPFAGFF TFPQYAATAA AGDGDNAEGG GGARAGAADI EVAMAESHAN VKVLAPRRPR  240
QLLRMVVALQ CVGLTVLHLN VTTTADHFAL YSFSLKMEDE CRLSSVDEIA AAVNQMVAKI  300
AGECIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RRRRRR
2114124RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G27220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078981e-109AK107898.1 Oryza sativa Japonica Group cDNA clone:002-134-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623907.11e-147transcription factor bHLH94
TrEMBLA0A0D9VLA60.0A0A0D9VLA6_9ORYZ; Uncharacterized protein
STRINGLPERR02G27220.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-51bHLH family protein