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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G26580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 364aa MW: 39678.8 Da PI: 5.7991 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.8e-12 | 181 | 238 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkklege 56 s ++GV++++++g+++A+++d + g +rk + g+++t+e+Aa+a++ a++k++ge LPERR02G26580.1 181 SSFHGVTRHRWSGKFEAHLWDsSCRmEGrRRKGKQ-GSYDTEEKAARAYDVAALKYWGE 238 5799*****************77667776667777.********************997 PP | |||||||
2 | AP2 | 49.3 | 1.2e-15 | 280 | 331 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g LPERR02G26580.1 280 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 331 57****************9995.....234************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.52E-17 | 181 | 247 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-14 | 181 | 247 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.596 | 182 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-13 | 182 | 246 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-9 | 182 | 238 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-21 | 182 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 183 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 280 | 341 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-9 | 280 | 331 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.64E-23 | 280 | 339 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-19 | 281 | 340 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.571 | 281 | 339 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-27 | 281 | 345 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 321 | 341 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEGSLEEGKA SGEPGEDEKT QSSPPINLNS LPATASAAAA APEEGGLHSA VESAAKDSTT 60 TKGVESVGTV HKKIPKNEVV DEDDVQTCIN EKKDSVILSN SKKPVDEKDA SANVAEDGQS 120 VDCSTEDQRA KFVTVVKKDE SVDDVSDSVN PVTVVGFRNE KGGTSATAGT SSVRPAGTRS 180 SSFHGVTRHR WSGKFEAHLW DSSCRMEGRR RKGKQGSYDT EEKAARAYDV AALKYWGENT 240 KLNFSVSEYE KELEDIRDMS REECITYLRR RSSCFSRGAS IYRGVTRRQK DGRWQARIGL 300 VAGTRDIYLG TFKTEEEAAE AYDIAAIEIR GKNAVTNFDR SNYIEKGMHC IEGAGLKLLA 360 SKPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 214 | GRRRKGKQ |
2 | 268 | 289 | RRRSSCFSRGASIYRGVTRRQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G26580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685114 | 0.0 | AY685114.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D8 (AP2D8) mRNA, complete cds. | |||
GenBank | FJ940220 | 0.0 | FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647887.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
Refseq | XP_015689372.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
TrEMBL | A0A0D9VL09 | 0.0 | A0A0D9VL09_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G26580.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 5e-69 | AP2 family protein |