PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G25270.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 579aa MW: 63725.6 Da PI: 9.7573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00041 | 172 | 189 | 2 | 19 |
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h++ E+rRR +iN++ LPERR02G25270.3 172 RSKHSATEQRRRTKINDR 189 889*************96 PP | |||||||
2 | HLH | 23.6 | 9.3e-08 | 202 | 233 | 20 | 55 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +e LrellP+ ++K +Ka+ L +++eYI+ Lq LPERR02G25270.3 202 LEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 233 799*******8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-12 | 168 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-18 | 169 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.518 | 170 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.24E-12 | 172 | 237 | No hit | No description |
SMART | SM00353 | 4.8E-5 | 176 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-5 | 201 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MQLFQGEEPA HDFLSLRAGG PSSPPFQHRD TQHSSQGYGV EMHRSLKPME LAKQRSRSNG 60 NGTAARSASP AGSDSEEHVL PGGVGTFSIR QASCTPSREE AGSHGVVRSG FAPVLHGARM 120 ENANETGGSG SRAYRAPSTM WQDSGIDQRS TATRADGRSS ASSADQGPST PRSKHSATEQ 180 RRRTKINDRQ ASREQEPTMK MLEILRELLP HTDQKRDKAS FLSEVIEYIR FLQEKVQKYE 240 TADPERNHED SKSMPWAKVY YRSCWRNTQN ISQVQGGDLS PSTQDMNNEQ YGSKQTSVAH 300 PAPFNTQSIT SAATSSSHMA AGTPQNWEKN STSSNQPPWL SMSTTHHESE SGNRMLKKHE 360 RQTHDDENHS ISSAYSQGSV PEPFVTSRIK LVQYVANRIQ FQICNRLFNR LTEALKKSGL 420 DPSQTNISVE INMSKRAREN TGDNSKCGRR RRLDGWVCSG AARLRLRLPP ERVGIWGIWE 480 SGDFCGFRWD VAEWETKRLV GGGRGAGGRA AIREGHGAGA GQSDGQAGKV STPCWFGGLK 540 RSGVVIEYLG LVRRAFLPVS LRGLLGSYPL LEDTGLGEA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G25270.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068228 | 0.0 | AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015689641.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X3 | ||||
TrEMBL | A0A0D9VKH7 | 0.0 | A0A0D9VKH7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G25270.3 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.3 | 4e-25 | bHLH family protein |