PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G23970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 345aa    MW: 37128.9 Da    PI: 6.9669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G23970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09157204455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  LPERR02G23970.1 157 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 204
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-17151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-10151208No hitNo description
PROSITE profilePS5088815.485153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAQCGGGDVS RHRKGHLETV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQQ DMGSNMCYGS  60
LGEPPLVPEP SNGSGSSGGF RKRRPEDAKG ESSSVCKRQR GKQQQQGQER AKAVGARKKA  120
EAASPKDSPA TSASTVTAGQ KTDYIHVRAR RGQATDSHSL AERVRRERIS ERMRYLQELV  180
PGCNKVTGKA GMLDEIINYV QSLQKQVEFL SMKIAASNPV VNFNIVEDLF GRQLSQAACN  240
PATLPAMTLP MGQVEPSCLQ MSPLQQMQTS AGSSGFGLEM VVSNPYSPAP AGPMSVPAGA  300
SVEPCLNVNG AAGWDIGSHS LFSGFDASFQ SVQSDCLLDN LKMEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G23970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191830.0AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627481.10.0transcription factor bHLH63
TrEMBLA0A0D9VK010.0A0A0D9VK01_9ORYZ; Uncharacterized protein
STRINGLPERR02G23970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.19e-39cryptochrome-interacting basic-helix-loop-helix 1