PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G23680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 280aa    MW: 30889.9 Da    PI: 8.974
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G23680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.6e-342478155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  LPERR02G23680.1 24 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 78
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0322181IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-332179IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-252479IPR006447Myb domain, plants
SuperFamilySSF466899.68E-172481IPR009057Homeodomain-like
PfamPF002498.6E-102677IPR001005SANT/Myb domain
PfamPF143797.4E-24123167IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MFEGMERMGY GGAGAGVVLS RDPKPRLRWT PDLHERFVEA VTKLGGPDKA TPKSVLRLMG  60
MKGLTLYHLK SHLQKYRLGK QNKKDTGLEA SRGAFAAHGI SFSSAAPPTI PSSENNNTGE  120
TPLADSLRYQ IEVQRKLHEQ LEVQKKLQMR IEAQGKYLQS ILEKAQNNLS YDSTGTASLE  180
ATRSQLTDFN LALSGFMNNV SQVCEQNNGE LAKAISEDSL RNSSLGFQLY HGIQEPDDVK  240
CSQDEGLLLL DLNIRGGYDH LSNSAMRGGE SGLKISQHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-212480157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G23680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0594480.0AK059448.1 Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647740.10.0PREDICTED: myb family transcription factor APL-like
SwissprotC0SVS43e-68PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLA0A0D9VJV60.0A0A0D9VJV6_9ORYZ; Uncharacterized protein
STRINGLPERR02G23680.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.17e-67G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]