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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G23560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 477aa MW: 49698.4 Da PI: 6.4478 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 7.9e-31 | 217 | 275 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ LPERR02G23560.1 217 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.109 | 211 | 277 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-31 | 211 | 277 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-26 | 214 | 277 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 216 | 276 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 218 | 275 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MCDYFLQRMD GDQASAAAAP AAGDLADIVR AGGAPLATEW QQLPPAAVET GLFPLPPPSS 60 DAADVFGGGD PFVGLPDPFG GDYPSSSSAD FFDAVAKVGG FVDVVGAGGG LDGGVGGGLM 120 GMRKQPILPR GMLAPSMSPR AIRPYPLMNG DTVKLGAPMA GGGGPCGAFD AAAGLHMSST 180 SPHAGGIKRR KNQARKVVCI PAPAAAGGRT SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY 240 RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSH HHHHAKNNSS 300 SASKNNDSYH QKPLVKAEPN DQSAATTSAT ETTAAGGGAV KEESTTMLLA KQQQKSMGDN 360 NANSSSSTAE QAAVVEHSDL MQQMFSQSYR PMIPELAGGG HHDDFFADLA ELESDPMSLI 420 FSKEYMATTK QPGGGDPDKE NAVGKDLVDP VYMLDWSTTT VVTTAGGSSF VQGEGGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-25 | 191 | 278 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-25 | 191 | 278 | 2 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G23560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073100 | 1e-179 | AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624748.1 | 0.0 | probable WRKY transcription factor 14 | ||||
Swissprot | O64747 | 8e-69 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0D9VJU3 | 0.0 | A0A0D9VJU3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G23560.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 9e-67 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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