PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G23260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 353aa    MW: 38026 Da    PI: 5.4303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G23260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-1491142155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  LPERR02G23260.1  91 QRMTHIAVERNRRRQMNEYLAILRSLMPEP---YVQRGDQASIVGGAIEFVKELE 142
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1789159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-1489146No hitNo description
PROSITE profilePS5088815.2590141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1191142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1491156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1196147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSTLVDALCA PSDTTALIYD TFNASATAAA SFLFDNAATF CDAGVFGVAA PADDAATTGE  60
KEATSSAAAP QRKKRRRRAK SCKSREETET QRMTHIAVER NRRRQMNEYL AILRSLMPEP  120
YVQRGDQASI VGGAIEFVKE LEQQLQSLEA QKRTLLPQLK PKCDDTMPME STTTTSNCSS  180
SVTEDAPPSG ADAPPFAQFF AYPQYVWCHS PRDSTTAASS SSFTSSPGAA AVALQAEHRP  240
GLADIEVSLV ETHASIRVMS PRRPGQLLKM IAGLQALRLT VLHLNVTTLD SLVLYSLSVK  300
VEEGCNLTTV DDIAAAVHHV FCIVDAEAAS EQLLAAEQLA ATAAKRELAT YMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076QRKKRRR
27177RKKRRRR
37277KKRRRR
491102RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G23260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606951e-131AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.11e-172transcription factor bHLH96
TrEMBLA0A0D9VJQ10.0A0A0D9VJQ1_9ORYZ; Uncharacterized protein
STRINGLPERR02G23260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-61bHLH family protein