PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G22870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 423aa    MW: 45200.2 Da    PI: 8.7592
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G22870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.83e-3099189186
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                      f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  LPERR02G22870.1  99 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGvG 189
                      89***************************955556889************************************************94322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-4190206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2996203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-2597186No hitNo description
PROSITE profilePS5086314.7299203IPR003340B3 DNA binding domain
PfamPF023621.2E-2799203IPR003340B3 DNA binding domain
SMARTSM010197.8E-2299205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEFTTTSSRF SKEEEDEEQD EASRREIPFM TAATTTAEAA AASAAPTSPS SSPAHAASSA  60
SASASGSSPP FRSDDGAGAS GSGGGGEAEA AAVEKEHMFD KVVTPSDVGK LNRLVIPKQY  120
AEKYFPLDSA ANEKGLLLNF EDRAGKPWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD  180
TVSFSRGVGD DAARRRLFID WKRRADTRVV VDPLRHHLSR GLPLPMPFTS SHYAPWGGGF  240
FVPPSPPATL YEHRLRQGLD FRTFNPAAAS PIGRQQVLLF GSAAARIPPQ AQLLSSRAPP  300
SPLMHHYTLQ QPSGGDGGVI RPVVLDSVPV NIESPTTAAK RVRLFGVNLD NPHGVGGSGA  360
GESSNHGHGG NALSLQAPAW MRRDPTLRLL ELPPHGGESS AASSPSSSSS SKRDAHSALD  420
LDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-62942043113B3 domain-containing transcription factor NGA1
5os9_B6e-62942043113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G22870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689086.10.0PREDICTED: B3 domain-containing protein Os02g0683500
RefseqXP_015689087.10.0PREDICTED: B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-175Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0D9VJJ90.0A0A0D9VJJ9_9ORYZ; Uncharacterized protein
STRINGLPERR02G22870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.17e-65B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]