 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR02G22600.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
ERF |
| Protein Properties |
Length: 243aa MW: 25424.8 Da PI: 4.7558 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR02G22600.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 51.8 | 2e-16 | 86 | 134 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
y+G+r ++ +g+Wv+eIr+p+ + +r++lg++ tae+Aa+a++ a+++l+g+
LPERR02G22600.1 86 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 134
9***9.55.6*********94....36*************************995 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MADLPEHQPS STSSSTAPPP PPPPQVQTVD LQAAPSPGTP ASPDHHSPSS DRGDNNKTAG 60
VATASAAPAA SSGEPSPRSS GKHAFYRGIR CRSGKWVSEI REPRKARRIW LGTYPTAEMA 120
AAAYDVAARA LRGADAVLNF PGSTASRPVP AATAAAENQQ QQQQQYGTSS PTADDVAGSA 180
QVDQGGFGND DFMDEEAIFE LPQLLRNMAA GMMMSPPRLS PTTSDVSPEP SEAGESLWSY 240
RDP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK243146 | 1e-102 | AK243146.1 Oryza sativa Japonica Group cDNA, clone: J100032D11, full insert sequence. |
| GenBank | AP005775 | 1e-102 | AP005775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0005A04. |
| GenBank | AP006060 | 1e-102 | AP006060.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0135D07. |
| GenBank | AP014958 | 1e-102 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
