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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G22320.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 23862.3 Da PI: 10.0535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.9e-06 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H LPERR02G22320.4 92 FVCEVCNKGFQREQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + LPERR02G22320.4 169 WKCDKCSKRYAVQSDWKAHSKIC 191 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.28E-8 | 91 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-6 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0041 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.1E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 157 | 190 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.28E-8 | 164 | 189 | No hit | No description |
SMART | SM00355 | 140 | 169 | 189 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MASNSSAAAV AALFGIRDSD HEDQIKPLFA QHHHQQQPVA PSNAGTAISA EGSVAGQAAA 60 AAPPVKKKRT LPDPDAEVIA LSPKTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL 120 KQKNPLQAQR RRVYLCPEPT CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV 180 QSDWKAHSKI CGTREYRCDC GTLFSRNALY MHY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-22 | 165 | 211 | 3 | 49 | Zinc finger protein JACKDAW |
5b3h_F | 5e-22 | 165 | 211 | 3 | 49 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G22320.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120603 | 0.0 | AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824078.1 | 1e-116 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824079.1 | 1e-116 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824080.1 | 1e-116 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824082.1 | 1e-116 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824083.1 | 1e-116 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 1e-90 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A0D9VJC4 | 1e-159 | A0A0D9VJC4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G22320.1 | 1e-153 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 6e-90 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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