PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 1475aa    MW: 154467 Da    PI: 6.18
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.72.9e-843366933374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+s ++++     s ts+ +++ +laa+k fs++sP+l+f+++
  LPERR02G21850.1 336 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSAFYLKEALLLALADSNHGVC-----SVTSPLDVAVKLAAYKSFSDLSPVLQFANF 424
                      7899*************************************************555555.....555556689********************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq++a R     +  p+l++T++ s +s+   el+  +++L++fA+ lg+pfefn++   
  LPERR02G21850.1 425 TATQALLDEIGGVatSCIHVIDFDLGVGGQWASFLQEFAHRHgaggAALPMLKLTAFMSTASHYPLELHLAQDNLSQFAADLGIPFEFNAI--- 515
                      ***********998899*************************77555589****************************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +++++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++ +d+ + +F ++fl++++ ++ l+dsl+a  + 
  LPERR02G21850.1 516 SFDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILQLVKQLGPKVVVAIDHGSDRADLPFSQHFLNCFQSCVFLLDSLDAA-GI 601
                      99*****999777779********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l++++++++v  ++++    h +   Wr+ + + GFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  LPERR02G21850.1 602 DADSACKIERFLIQPRVEDAVIGRHKA----H-KSIAWRSVFATTGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 690
                      99*******************999888....4.5779********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  LPERR02G21850.1 691 SWR 693
                      **8 PP

2GRAS277.54.1e-85111614743374
             GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94  
                       + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+      +  p+s ts+ +++ +laa+k fs++sP+l+f+
  LPERR02G21850.1 1116 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLKEALLLALAD----GHHGAPTSVTSPLDVALKLAAYKSFSDLSPVLQFA 1203
                       7899************************************************9....44455777777778********************* PP

             GRAS   95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 
                       ++ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+       p +++T+++s +s++  el+ t+++L++fA+ lg+pfefn+
  LPERR02G21850.1 1204 NFTATQALLDEIGGTtaSCIHVIDFDLGVGGQWASFLQELAYRRgaggVTLPLFKLTAFVSTASHHPLELHLTQDNLSQFATDLGIPFEFNA 1295
                       *************998899**********************99965444489**************************************** PP

             GRAS  181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 
                       +   +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++ ad+ + sF ++fl++++ ++ l+dsl
  LPERR02G21850.1 1296 V---SLDAFNPAELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLGPKVVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSL 1377
                       8...9*********888889********9777665...44....556********************************************* PP

             GRAS  272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 
                       +a  + + + + k+Er+l++++++++v  ++++      ++  Wr+ +++aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W+
  LPERR02G21850.1 1378 DAA-GIDPDSACKIERFLIQPRVQDAVLGRHKA-----HKAIAWRNVFSAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQ 1463
                       887.7788999*****************99998.....55889************************************************* PP

             GRAS  364 drpLvsvSaWr 374 
                       + +Lvs+S+Wr
  LPERR02G21850.1 1464 RGELVSLSSWR 1474
                       **********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.377308673IPR005202Transcription factor GRAS
PfamPF035141.0E-81336693IPR005202Transcription factor GRAS
PROSITE profilePS5098542.38910881454IPR005202Transcription factor GRAS
PfamPF035141.4E-8211161474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 1475 aa     Download sequence    Send to blast
MRAVLLGAER RGVADHGGGN QLFWPAGKGL VVAEPRSVLD CTRSPSPPKS SSTLSSSLGG  60
GGSADSTGVA AVSESSTAAA TEATRWGAPG EHGGGGGKED WGGGCELPPI PGALDVGLVG  120
GEGGWDATIG NAAAGGGQDQ SFLNWFIGAA GDLEQPGPPL PVHQQPLIDN AAFGIPAVDA  180
LGFSLDHPLS GVASDLSSSG AHTATGGGKA SLGFGLFSPE ATSLEHSPPP MLLHEGIDTK  240
PPLLGTQPPF LLNHFHHQQP NPAAAFFMPF PEHNHQSPFL QPPLKRHHAM PDDLYLARNQ  300
LPLHASVPFQ LQPSPPPTRG AMKTTAAEAA QQQLLDELAA AAKATEAGNS VGAREILARL  360
NQQLPPLGKP FLRSAFYLKE ALLLALADSN HGVCSVTSPL DVAVKLAAYK SFSDLSPVLQ  420
FANFTATQAL LDEIGGVATS CIHVIDFDLG VGGQWASFLQ EFAHRHGAGG AALPMLKLTA  480
FMSTASHYPL ELHLAQDNLS QFAADLGIPF EFNAISFDAF NPAELISSSG DEVVAVSLPV  540
GCSARAPPLP AILQLVKQLG PKVVVAIDHG SDRADLPFSQ HFLNCFQSCV FLLDSLDAAG  600
IDADSACKIE RFLIQPRVED AVIGRHKAHK SIAWRSVFAT TGFKPVPPSN LAEAQADCLL  660
KRVQVRGFHV EKRGAALTLY WQRGELVSIS SWRGEIDEAT QRRERPSVGE VARRGDGERE  720
GERARGWSRG SANCTRQGSE GARSTAPACP PHPPPHLAVL LPLPSKGYYY YIEHTKEIPA  780
PLFQISPSAR GARDYGVVVV EPRSVLDCTR SPSPRNSTST LSSSQGGGGA DSSGVAAVSE  840
SSAAAAAEAT KWGAPGEHGG GGGGGGKEEW SGGCELPPIP GALDVGLVGG EGWDAMLGNA  900
AAAAAAGQDQ SFLNWIIGAA GDLEQPGPPL IDNAGFGIPA VDPLGFSLDH PLSGVASDLS  960
SSGAHTATAG GGKASLGFGL FSPEATSLEQ QPPPSMLFHE GIDTKPSLLG EQPPGILNHY  1020
HHQPPNPAAA FFMPLPSFPE QNHQSPLLQP PPKRHHAMPD DLYLARNHLP AAAAAQGLAF  1080
SPLHVPVPFQ LQPSPPPTRG AMKTTAAEAA QQQLLDELAA AAKATEAGNS VGAREILARL  1140
NQQLPPLGKP FLRSASYLKE ALLLALADGH HGAPTSVTSP LDVALKLAAY KSFSDLSPVL  1200
QFANFTATQA LLDEIGGTTA SCIHVIDFDL GVGGQWASFL QELAYRRGAG GVTLPLFKLT  1260
AFVSTASHHP LELHLTQDNL SQFATDLGIP FEFNAVSLDA FNPAELISST GDEVVAVSLP  1320
VGCSARAPPL PAILRLVKQL GPKVVVAIDH GADRADLSFS QHFLNCFQSC VFLLDSLDAA  1380
GIDPDSACKI ERFLIQPRVQ DAVLGRHKAH KAIAWRNVFS AAGFKPVPPS NLAEAQADCL  1440
LKRVQVRGFH VEKRGAALTL YWQRGELVSL SSWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2633414744375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103GGKEDWGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLA0A0D9VJ640.0A0A0D9VJ64_9ORYZ; Uncharacterized protein
STRINGLPERR02G21850.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-87GRAS family protein