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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G21850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 1475aa MW: 154467 Da PI: 6.18 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 274.7 | 2.9e-84 | 336 | 693 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L ++A+a ++g+ a+++Larl+++ p g+p+ R a+y++eAL la+s ++++ s ts+ +++ +laa+k fs++sP+l+f+++ LPERR02G21850.1 336 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSAFYLKEALLLALADSNHGVC-----SVTSPLDVAVKLAAYKSFSDLSPVLQFANF 424 7899*************************************************555555.....555556689********************* PP GRAS 97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ta qa+l+++ g +++H+iDfd++ G+QW+++lq++a R + p+l++T++ s +s+ el+ +++L++fA+ lg+pfefn++ LPERR02G21850.1 425 TATQALLDEIGGVatSCIHVIDFDLGVGGQWASFLQEFAHRHgaggAALPMLKLTAFMSTASHYPLELHLAQDNLSQFAADLGIPFEFNAI--- 515 ***********998899*************************77555589****************************************9... PP GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++++++ eL ++ +E++aV+l + + +++L+lvk+l Pkvvv +++ +d+ + +F ++fl++++ ++ l+dsl+a + LPERR02G21850.1 516 SFDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILQLVKQLGPKVVVAIDHGSDRADLPFSQHFLNCFQSCVFLLDSLDAA-GI 601 99*****999777779********9777665...44....556*********************************************888.78 PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +++ + k+Er+l++++++++v ++++ h + Wr+ + + GFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S LPERR02G21850.1 602 DADSACKIERFLIQPRVEDAVIGRHKA----H-KSIAWRSVFATTGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 690 99*******************999888....4.5779********************************************************* PP GRAS 372 aWr 374 +Wr LPERR02G21850.1 691 SWR 693 **8 PP | |||||||
2 | GRAS | 277.5 | 4.1e-85 | 1116 | 1474 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 + L ++A+a ++g+ a+++Larl+++ p g+p+ R a+y++eAL la+ + p+s ts+ +++ +laa+k fs++sP+l+f+ LPERR02G21850.1 1116 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLKEALLLALAD----GHHGAPTSVTSPLDVALKLAAYKSFSDLSPVLQFA 1203 7899************************************************9....44455777777778********************* PP GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ++ta qa+l+++ g +++H+iDfd++ G+QW+++lq+La R+ p +++T+++s +s++ el+ t+++L++fA+ lg+pfefn+ LPERR02G21850.1 1204 NFTATQALLDEIGGTtaSCIHVIDFDLGVGGQWASFLQELAYRRgaggVTLPLFKLTAFVSTASHHPLELHLTQDNLSQFATDLGIPFEFNA 1295 *************998899**********************99965444489**************************************** PP GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 + +l+++++ eL ++ +E++aV+l + + +++L+lvk+l Pkvvv +++ ad+ + sF ++fl++++ ++ l+dsl LPERR02G21850.1 1296 V---SLDAFNPAELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLGPKVVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSL 1377 8...9*********888889********9777665...44....556********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 +a + + + + k+Er+l++++++++v ++++ ++ Wr+ +++aGFkpvp s+ a++qa++ll++v+++g++ve++ ++l+l+W+ LPERR02G21850.1 1378 DAA-GIDPDSACKIERFLIQPRVQDAVLGRHKA-----HKAIAWRNVFSAAGFKPVPPSNLAEAQADCLLKRVQVRGFHVEKRGAALTLYWQ 1463 887.7788999*****************99998.....55889************************************************* PP GRAS 364 drpLvsvSaWr 374 + +Lvs+S+Wr LPERR02G21850.1 1464 RGELVSLSSWR 1474 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.377 | 308 | 673 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-81 | 336 | 693 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 42.389 | 1088 | 1454 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-82 | 1116 | 1474 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 1475 aa Download sequence Send to blast |
MRAVLLGAER RGVADHGGGN QLFWPAGKGL VVAEPRSVLD CTRSPSPPKS SSTLSSSLGG 60 GGSADSTGVA AVSESSTAAA TEATRWGAPG EHGGGGGKED WGGGCELPPI PGALDVGLVG 120 GEGGWDATIG NAAAGGGQDQ SFLNWFIGAA GDLEQPGPPL PVHQQPLIDN AAFGIPAVDA 180 LGFSLDHPLS GVASDLSSSG AHTATGGGKA SLGFGLFSPE ATSLEHSPPP MLLHEGIDTK 240 PPLLGTQPPF LLNHFHHQQP NPAAAFFMPF PEHNHQSPFL QPPLKRHHAM PDDLYLARNQ 300 LPLHASVPFQ LQPSPPPTRG AMKTTAAEAA QQQLLDELAA AAKATEAGNS VGAREILARL 360 NQQLPPLGKP FLRSAFYLKE ALLLALADSN HGVCSVTSPL DVAVKLAAYK SFSDLSPVLQ 420 FANFTATQAL LDEIGGVATS CIHVIDFDLG VGGQWASFLQ EFAHRHGAGG AALPMLKLTA 480 FMSTASHYPL ELHLAQDNLS QFAADLGIPF EFNAISFDAF NPAELISSSG DEVVAVSLPV 540 GCSARAPPLP AILQLVKQLG PKVVVAIDHG SDRADLPFSQ HFLNCFQSCV FLLDSLDAAG 600 IDADSACKIE RFLIQPRVED AVIGRHKAHK SIAWRSVFAT TGFKPVPPSN LAEAQADCLL 660 KRVQVRGFHV EKRGAALTLY WQRGELVSIS SWRGEIDEAT QRRERPSVGE VARRGDGERE 720 GERARGWSRG SANCTRQGSE GARSTAPACP PHPPPHLAVL LPLPSKGYYY YIEHTKEIPA 780 PLFQISPSAR GARDYGVVVV EPRSVLDCTR SPSPRNSTST LSSSQGGGGA DSSGVAAVSE 840 SSAAAAAEAT KWGAPGEHGG GGGGGGKEEW SGGCELPPIP GALDVGLVGG EGWDAMLGNA 900 AAAAAAGQDQ SFLNWIIGAA GDLEQPGPPL IDNAGFGIPA VDPLGFSLDH PLSGVASDLS 960 SSGAHTATAG GGKASLGFGL FSPEATSLEQ QPPPSMLFHE GIDTKPSLLG EQPPGILNHY 1020 HHQPPNPAAA FFMPLPSFPE QNHQSPLLQP PPKRHHAMPD DLYLARNHLP AAAAAQGLAF 1080 SPLHVPVPFQ LQPSPPPTRG AMKTTAAEAA QQQLLDELAA AAKATEAGNS VGAREILARL 1140 NQQLPPLGKP FLRSASYLKE ALLLALADGH HGAPTSVTSP LDVALKLAAY KSFSDLSPVL 1200 QFANFTATQA LLDEIGGTTA SCIHVIDFDL GVGGQWASFL QELAYRRGAG GVTLPLFKLT 1260 AFVSTASHHP LELHLTQDNL SQFATDLGIP FEFNAVSLDA FNPAELISST GDEVVAVSLP 1320 VGCSARAPPL PAILRLVKQL GPKVVVAIDH GADRADLSFS QHFLNCFQSC VFLLDSLDAA 1380 GIDPDSACKI ERFLIQPRVQ DAVLGRHKAH KAIAWRNVFS AAGFKPVPPS NLAEAQADCL 1440 LKRVQVRGFH VEKRGAALTL YWQRGELVSL SSWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-26 | 334 | 1474 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | GGKEDWGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G21850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627071.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A0D9VJ64 | 0.0 | A0A0D9VJ64_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G21850.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 6e-87 | GRAS family protein |