PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21720.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 343aa    MW: 35526.4 Da    PI: 7.0269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05526223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ C+++F ++  L  H+r+H
  LPERR02G21720.1  5 TCKLCSRRFASPRALAGHMRSH 26
                     6********************9 PP
2zf-C2H211.40.00099197219123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  LPERR02G21720.1 197 FQCPACKKVFRSYQALGGHRASH 219
                      89**********99999998887 PP
3zf-C2H213.20.00028265287123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++Fs+   L  H r+H
  LPERR02G21720.1 265 HECPYCYRVFSSGQALGGHKRSH 287
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139121.3E-4626IPR007087Zinc finger, C2H2
PfamPF139128.6E-11196219IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286197219IPR007087Zinc finger, C2H2
SuperFamilySSF576676.45E-8197219No hitNo description
SMARTSM003550.026197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576676.45E-8260287No hitNo description
PfamPF139125.6E-12265287IPR007087Zinc finger, C2H2
SMARTSM003550.2265287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39265287IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAANAVTKL QQISSVSSAS  60
TSFTAAAEEE EEDDGFKKPL SIYTLRENPK RSLRVSDYAF SDRESEAEST PTPAAKSARI  120
TGAGDGEPMS SLSYAASPEE EVAFALMMLS RDTWPSSSPS VVYSDDDGSD DGGGGGYALR  180
RPPAPTPPPP AEKRTRFQCP ACKKVFRSYQ ALGGHRASHV RGGRGGCCAP PPPPPPPPPR  240
PRTLPEHDAD GEEHMDGKAA SSSPHECPYC YRVFSSGQAL GGHKRSHVCS AAAAATTAAG  300
SGGTPPPSQG KILGMFDLNI APPADEVELS VVSDPHFPSN PGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624884.11e-122zinc finger protein ZAT1
TrEMBLA0A0D9VJ490.0A0A0D9VJ49_9ORYZ; Uncharacterized protein
STRINGLPERR02G21720.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-26C2H2-like zinc finger protein