PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G21710.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 593aa    MW: 63226 Da    PI: 6.5028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G21710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0596113219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F+++ +L  H
  LPERR02G21710.1  96 VCENCGKEFTSWKMLLDH 113
                      6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9332648IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-62648No hitNo description
SMARTSM003553.52648IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-42648IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-690115No hitNo description
SMARTSM0035527095115IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.78E-8269292No hitNo description
SMARTSM003550.13270292IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-9270294IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
SuperFamilySSF576676.78E-8386413No hitNo description
PfamPF139121.8E-12390414IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349391413IPR007087Zinc finger, C2H2
SMARTSM003550.46391413IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MTVAQSLRLV PSPPPQPPPP PLVYKHHCRV CNKGFMCGRA LGGHMRAHGI NADADDDTMD  60
DESLLSPFDG GEPSDTTSKR MYALRTNPGQ PRNCRVCENC GKEFTSWKML LDHGRCGAGF  120
DEEDGLGSSL HSPPLHDDGD GDDGEKEDEA GLTLAWSKGK RSRRVTKVMA VGTGSVSELQ  180
LPVVPSNEEE DVAKFLVMLS SSRAAPQPVI VVDDADQESC ASASKNEEMI RNRLLVPQPI  240
SVAAQPQMMT TVFATQVVAQ HVPAVPRGMF ECKACKKVFT SHQALGGHRA SHKKVKGCFA  300
AKLESNRNET QQHVAAAAAP LDDAKASASH VVVADTSTDA NTVTTNVVGA GEIVIATAAP  360
DHMAMTMPID DFTPGLAPST VPPFKKKGKV HECSICHRVF TSGQALGGHK RCHWLTSGST  420
ADPLAKFQPV SQDNAMVAAM CHHLTLGRPM FDVTPDQRIL DLNVPTTNVT NPLAEVAARQ  480
QQQQQQQVAG LNDAALCLNA AAAAYLQSWT RQNNGSHVNK NTPTSSRAND AAGGGAAAED  540
DEADSTSAKR AKIGDLKDMN MAGESLHWLQ VGIGISSESK EKSTQECSGR DKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G21710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624902.10.0uncharacterized protein LOC4330215
TrEMBLA0A0D9VJ480.0A0A0D9VJ48_9ORYZ; Uncharacterized protein
STRINGLPERR02G21710.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-19C2H2-like zinc finger protein