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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G21590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 23572.9 Da PI: 4.9162 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g LPERR02G21590.1 49 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 98 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-36 | 49 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 49 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 49 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-12 | 49 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.75E-29 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDDSSSFGSD LSSSSSGGNA PASPPSTAST SSSDAKKKRA RKEDGHHPTY RGVRMRSWGK 60 WVSEIREPRK KSRIWLGTFA TAEMAARAHD VAALAIKGRA AHLNFPGLAH ELPRPATAAP 120 KDVQAAAALA AAADFPPGAA SAANAAGADD NTDGGSDDVG SASASPSPPP PETTDDGLFD 180 LPDLLLDLRY GGPPSSCLSC ASSWDDNEVG LISGAGVFRL EEPLLWEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 47 | 106 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G21590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194841.1 | 1e-81 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 3e-48 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0D9VJ35 | 1e-160 | A0A0D9VJ35_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G21590.1 | 1e-161 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-38 | ERF family protein |
Publications ? help Back to Top | |||
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