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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G21480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 324aa MW: 34494.3 Da PI: 5.8137 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.9e-20 | 142 | 193 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+ LPERR02G21480.1 142 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAVEAARAYDRAAFRMRGA 193 8********.***********8876..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 141 | 201 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.263 | 142 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 142 | 201 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-14 | 142 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-38 | 142 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.72E-32 | 142 | 201 | No hit | No description |
PRINTS | PR00367 | 1.9E-13 | 143 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-13 | 182 | 202 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDFTGEIDDF NLQLLHEQLL ADDPCLSVVD EYAAAQQCFH PAAFLPQQQQ QPAPAGYMEL 60 ANDQYNSGVS AGEAAFRAAA EPVMIRFGGE VPSPMTSDHR MPPQLTISLP PASHSHAAWA 120 ATAAHPALLQ AQAAADANDF RKYRGVRQRP WGKFAAEIRD PKKRGSRVWL GTYDTAVEAA 180 RAYDRAAFRM RGAKAILNFP NEVGSRGADF LAPPPPASHG KRKRHDAAAT AADPDVEVIG 240 ESPSSKSVKT EAYPSPASSS LASTTTSTVK SSSTSPSPSS EAACGGGDQL FASSWSWEQL 300 EGLFGSLSPL SAHPQMGFPE VTVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-28 | 143 | 205 | 6 | 68 | ATERF1 |
3gcc_A | 5e-28 | 143 | 205 | 6 | 68 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G21480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624058.1 | 1e-115 | ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0D9VJ19 | 0.0 | A0A0D9VJ19_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G21480.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 6e-23 | ethylene responsive element binding factor 5 |