![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR02G20750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 465aa MW: 50489.5 Da PI: 7.8616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 209 | 259 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge LPERR02G20750.1 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 259 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.39E-33 | 208 | 268 | No hit | No description |
SMART | SM00380 | 5.9E-39 | 209 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 209 | 266 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 209 | 267 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 209 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 210 | 221 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-12 | 210 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-11 | 232 | 248 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 465 aa Download sequence Send to blast |
MDAVDRGGGA RGRGRRWKGK GVSAAETMQQ LPAPVLEDAP AAAALLRPVK KIRSPDRRLQ 60 RSVSSLSSAP ASPDSSSVSN PMSPPAMSLP NQQPPSTRHV FPFAYDPLAS SEPRLLPLLQ 120 YSSLYPQPVL PQQQSPLQHQ QMISFGSSQH QQQPPLFPPQ YLPPEEQQRL LLRYWSEALN 180 LSPRGVRGAG AVPPLLYQHL LRAPGPPKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD 240 TAEDAAMAYD REAFKLRGEN ARLNFPDLFL GKGRTGGSGR TSASAAAASC SSSSSSAPPT 300 PDESQTTQQA LQQQPQLNTE DLSNTEELKP LLSSAAEQDA IPEHEPNPQL QMADDQASDG 360 NTAMFQPSAT YGGGVWGPAD EAWFSAWGPG SSVWDYDMDS AHGLLLQSRF IGEQTGMDYA 420 YTAPEVLVAP APAAGTAMVA AASSSHLPPR PPPPRHHSPS FTWKD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-20 | 208 | 266 | 4 | 63 | ATERF1 |
3gcc_A | 9e-20 | 208 | 266 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR02G20750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627619.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | A0A0D9VIR4 | 0.0 | A0A0D9VIR4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G20750.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20880.1 | 8e-37 | ERF family protein |