PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G18630.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Protein Properties

Length: 1002aa MW: 112156 Da PI: 8.788

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G18630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.4	3.3e-10	908	955	33	83
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 s ++l+d+ r W v + k+ + +t+GWk Fv an+L++gD++ + LPERR02G18630.1 908 S-VIILKDPMKRLWPVIY--YEKPIFVGFTAGWKPFVAANNLQVGDVCKLV 955 3.699***********..**************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.124	302	395	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.65E-17	304	397	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.5E-15	304	397	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.37E-8	305	392	No hit	No description
SMART	SM01019	1.9E-4	305	395	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-7	314	392	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.727	874	971	IPR003340	B3 DNA binding domain
SMART	SM01019	0.003	876	971	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-10	883	955	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-11	883	955	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.25E-11	885	962	No hit	No description
Pfam	PF02362	1.3E-7	907	955	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MDGAFQGRGC AERLRSRDKI DEDESCSDDM RIYAGEEKKK KCSYDMKKNV RKDAGKEMSN 60 CGKKKNRTAG SDDAEQRKKK KILNGDNKPK SRKVCTPFFE KARKKMLSTI SQNGPMKKKS 120 NDISDKKKTV PLSVNKNKVR KGEMSNRTSP NTPVAKERKI QHSDSMEMKK KKRDASFVHP 180 GKRTSQIFNT NNKEMKGEMS NRTSPNTPVV KERKIQHSDS MEMKKKKRDA SFVHSGKRTS 240 QIFNTNNKEM KRKVPSTPLR REQKMQEGRS NDKKEAKKAR IIAEGNEKKT CSDQKKKKRK 300 APFAFFKFMC NKFKELLFIP PAVTPSFEDL NNHHVYLEDS EGKSSKIRLS VVDGSLAFYE 360 GWNNFVLEHF INWGDFLLFE YTEESTFSVR VFGPDSCERL HFNGESIRKG TMKKRKERHT 420 LSDDLVSSYS GQDSEGIYDD SHVSGESSRR KEPKITVDVE IVPSNVAAKS INTASETKDP 480 ERVESGVGNE SLMALGNKDK NLGDGECKTR SDSVLCIQEE TRRSEVIIIT DEASSTQENE 540 DTMKQRTSNE ASETHHMPIN TQKEAERVGD DVWHESSVAL NNKMGNMILG KCKNNDVSPI 600 CSTGRTNGSE IIPTTDSIPL AQEDNDREKL STFSCLKEGK STTREPELAA TTPTKCTEIH 660 DLDEDSRQKH QRNSVQVKST IDIDNYPNNG EMNSSGNDSR LYEAPGGSRC LQKWKEDIVS 720 GQAAHDEIGQ VRPEKPQNAG EKFVDNCGPM GQTPVDPRLE SDVTDTCLKS VLTIPIEQLP 780 SPDSVSVSKY GDGSADGNHF FNRKGATAQL QATKEPLKPT CSGGSRQGDK ILVSASRAHQ 840 SELQIPQQEN AKFSCCVTPV ALVPANDELQ DLDDHSLQLC ISSTIQKWIE LPKSVPKAPL 900 NKGLHDRSVI ILKDPMKRLW PVIYYEKPIF VGFTAGWKPF VAANNLQVGD VCKLVKELDE 960 DEPAYQASRK IVVFCCSNNN NVLGCCGWPP GCLAAVLGGL HF

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MDGAFQGRGC AERLRSRDKI DEDESCSDDM RIYAGEEKKK KCSYDMKKNV RKDAGKEMSN  60
CGKKKNRTAG SDDAEQRKKK KILNGDNKPK SRKVCTPFFE KARKKMLSTI SQNGPMKKKS  120
NDISDKKKTV PLSVNKNKVR KGEMSNRTSP NTPVAKERKI QHSDSMEMKK KKRDASFVHP  180
GKRTSQIFNT NNKEMKGEMS NRTSPNTPVV KERKIQHSDS MEMKKKKRDA SFVHSGKRTS  240
QIFNTNNKEM KRKVPSTPLR REQKMQEGRS NDKKEAKKAR IIAEGNEKKT CSDQKKKKRK  300
APFAFFKFMC NKFKELLFIP PAVTPSFEDL NNHHVYLEDS EGKSSKIRLS VVDGSLAFYE  360
GWNNFVLEHF INWGDFLLFE YTEESTFSVR VFGPDSCERL HFNGESIRKG TMKKRKERHT  420
LSDDLVSSYS GQDSEGIYDD SHVSGESSRR KEPKITVDVE IVPSNVAAKS INTASETKDP  480
ERVESGVGNE SLMALGNKDK NLGDGECKTR SDSVLCIQEE TRRSEVIIIT DEASSTQENE  540
DTMKQRTSNE ASETHHMPIN TQKEAERVGD DVWHESSVAL NNKMGNMILG KCKNNDVSPI  600
CSTGRTNGSE IIPTTDSIPL AQEDNDREKL STFSCLKEGK STTREPELAA TTPTKCTEIH  660
DLDEDSRQKH QRNSVQVKST IDIDNYPNNG EMNSSGNDSR LYEAPGGSRC LQKWKEDIVS  720
GQAAHDEIGQ VRPEKPQNAG EKFVDNCGPM GQTPVDPRLE SDVTDTCLKS VLTIPIEQLP  780
SPDSVSVSKY GDGSADGNHF FNRKGATAQL QATKEPLKPT CSGGSRQGDK ILVSASRAHQ  840
SELQIPQQEN AKFSCCVTPV ALVPANDELQ DLDDHSLQLC ISSTIQKWIE LPKSVPKAPL  900
NKGLHDRSVI ILKDPMKRLW PVIYYEKPIF VGFTAGWKPF VAANNLQVGD VCKLVKELDE  960
DEPAYQASRK IVVFCCSNNN NVLGCCGWPP GCLAAVLGGL HF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	80	KKKNRTAGSDDAEQRKKKK
2	294	299	KKKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G18630.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624189.1	0.0	B3 domain-containing protein Os02g0598200
Refseq	XP_015624190.1	0.0	B3 domain-containing protein Os02g0598200
Swissprot	Q6K5K2	0.0	Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBL	A0A0D9VHV4	0.0	A0A0D9VHV4_9ORYZ; Uncharacterized protein
STRING	LPERR02G18630.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12272	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	6e-10	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]