PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G18380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 422aa    MW: 46930.8 Da    PI: 5.1205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G18380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.51e-26572291128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpk............................kvkaeekew 58 
                      lp+G++F+P+d el+ e+L++k+        + ++e+i+++d    i++++P++Lp                              +k++ ++ 
  LPERR02G18380.1  57 LPAGVKFDPSDLELL-EHLEQKIGLGGskphMFIDEFIPTIDndegILYSHPENLPGmdfmssdgillfskllvypcrllnswatGMKKDGTSG 149
                      799************.99****876654565333334555544445**********5589******************9999877666677788 PP

              NAM  59 yfFskrdkkyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +fF++ +++y  g+rk+r+         +++ +W++tgk+k++++ kg ++g kk++v+y  ++r  k+ k++Wvmh+y+l
  LPERR02G18380.1 150 HFFHRVSNAYGCGQRKRRKisncdhivsVEHVRWHKTGKSKAIVD-KGVTKGWKKIMVLYksSQRGVKPDKANWVMHQYHL 229
                      ******************87899998888899*************.999***********4435777888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-1042125IPR003441NAC domain
PROSITE profilePS5100525.64657248IPR003441NAC domain
PfamPF023651.3E-1258229IPR003441NAC domain
SuperFamilySSF1019419.15E-21131248IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MARSWLITGR GVAKKIRNAP HSSSRPISEL GAEAQMECPN CKHVIDNSDV AIQWPGLPAG  60
VKFDPSDLEL LEHLEQKIGL GGSKPHMFID EFIPTIDNDE GILYSHPENL PGMDFMSSDG  120
ILLFSKLLVY PCRLLNSWAT GMKKDGTSGH FFHRVSNAYG CGQRKRRKIS NCDHIVSVEH  180
VRWHKTGKSK AIVDKGVTKG WKKIMVLYKS SQRGVKPDKA NWVMHQYHLG AQEDEKDGEL  240
VVSRITYQLH GKQIDKSETE NADEESDAFA ARVGPKTPKT NTPQPCRLNN SPCETENYAV  300
VLEEQDEEEV NIPIVSLKDD AENPAWCAGE SQAAQEALEA QPSLDESLRC HEVLDSSYHE  360
TLLPSDRPIL SQGGNELLDM NLNGLYGLAD LYNVDLGTPP DFQLADLQFG SQESIGKWLD  420
SI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G18380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1219530.0AK121953.1 Oryza sativa Japonica Group cDNA clone:J033107L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624086.10.0NAC domain-containing protein 73
TrEMBLA0A0D9VHS50.0A0A0D9VHS5_9ORYZ; Uncharacterized protein
STRINGLPERR02G18380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.13e-83NAC domain containing protein 44