 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
LPERR02G17010.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
Trihelix |
| Protein Properties |
Length: 420aa MW: 44056.3 Da PI: 6.8115 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR02G17010.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 46.1 | 1.3e-14 | 69 | 150 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W++ + +Li+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +k+ + ++pyf++l+
LPERR02G17010.1 69 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKVEKAKPDS-------SWPYFHRLD 150
*************************************87889976333778**************99998886.......5******97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MDDDGGALSP SSSLSPSRSP SPLPVADPVT VAAAPPGHLA VALPIPKPGS SASGGGGGGG 60
GGGGREDAWS DGATSTLIDA WGERFVALGR GSLRHPQWQE VAEVVSSRDG YSKPPKSDVQ 120
CKNRIDTLKK KYKVEKAKPD SSWPYFHRLD LLLAAVQKPG GAAASAAAAG AGNSGGSGGG 180
GGSAAARSTA PMAPRVNFPQ RTRTQFLPPS AGVKRRMPSP PQASVSSESS DGFPPEPPLA 240
AANGKRRRVE EEVNGADSSN RAQGLRELAE AIRRFGEVYE RVESAKREQE LRMERDRLEV 300
ARELEDQRVQ FFVKMQMELS KANNAGSSAA AAVVGAAATA VAADGNGTRR TAVAGDVGTS 360
SNHHVRYRFK GGRHHHTPQQ PQHQYNENNV AEATRGTGNG SDTDNKEDED DVEDEEDESQ
|
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT3G14180.1 | 2e-31 | sequence-specific DNA binding transcription factors |
