PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G17000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 451aa    MW: 48924.5 Da    PI: 5.6665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G17000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00039317343542
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKae 42 
                      h+++Er RR++i +++  L+el  k           a+
  LPERR02G17000.1 317 HSIAERVRREKISDRMKDLQELTNK-----------AS 343
                      99******************98544...........44 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.32E-9310359No hitNo description
SuperFamilySSF474591.96E-10310365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-8314365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-4318361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEKGDDVIFC LLGLRRSAYA QILQHRDTHL SINHQTLVFF LPAELNRLYI YSLTSPPPVS  60
ALHSPVLLHP LSPSPDSNFF SFCREIERMG IDPFMPWWSS SIADTSSGIH VAATSAVDEA  120
TSSFLGEAST AKLQVNLLMQ AELLQQQQHQ SEGIGLAAMD DATAAAAALM LGVPPPPPCF  180
GFGGRITNNG DLLQQEGDGS MYPPRVVDTL LPSPQLQLID DTEINTGNLL SFAPPGQQQF  240
TPNTGNLQIG QKPTQSYSGK KGSAASPVNL SEVLPNGNGS SSAWDGALLL NGNGSSAGNG  300
ARKPRVRARR GQATDPHSIA ERVRREKISD RMKDLQELTN KASMLDDIID YVKLLQFQVN  360
VLSRSRLGAT KADAIFPLPR EPKTEGSGIL LRPRSSGERQ GQSESELAVE VKDEALQLME  420
ESMMTAMQFL QSKGFIFMPL SLASEMRGQK I
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G17000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419247e-48AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688637.13e-69PREDICTED: transcription factor bHLH85-like
TrEMBLA0A0D9VH970.0A0A0D9VH97_9ORYZ; Uncharacterized protein
STRINGLPERR02G17000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-35LJRHL1-like 2