PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G15950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 288aa    MW: 31082.4 Da    PI: 6.5319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G15950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-1296143455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h  +Er RR+ri++ feeL  l+P++    s+K +K++i+ +Av +++sL+
  LPERR02G15950.1  96 SHIFAERERRRRIKKLFEELHALMPHL----SPKADKVTIVGEAVSFVRSLE 143
                      68889*********************9....9*****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.07892142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1395155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1395156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-996143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-998148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-4106147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAKDGIKFFP MGSGDSGDNQ EGTGDNQDQA GNEEVQQPAA ADKGKAIAVD DEGGSLSKGS  60
KRLDEPAASS TNVRTGKKGK GKLGKVKGSV SVIISSHIFA ERERRRRIKK LFEELHALMP  120
HLSPKADKVT IVGEAVSFVR SLEESLAELE KRKREKDSLV ARCALLALGS GASSSWAPAA  180
ADPPAPLEAP GGMRVWAGPR LVLNLFGDEQ AFIGASLPRR PGVITMVLEV LDRHDIEVIN  240
MQISANESRS LVNFHTRLDR EHGMFMETVT AQEIYLVALS EIMAWLGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110ERRRRIKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G15950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878857.12e-74transcription factor bHLH95
TrEMBLA0A0D9VGV70.0A0A0D9VGV7_9ORYZ; Uncharacterized protein
STRINGLPERR02G15950.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-18bHLH family protein