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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G15930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 22872.9 Da PI: 11.2316 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 81 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r +lg+f tae+Aa+a++aa+ +++g LPERR02G15930.1 81 RYRGVRRRR-WGKWAAEIRDPR----KaARLWLGTFATAEDAARAYDAAAIRFRG 130 7*****777.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.501 | 81 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-22 | 81 | 139 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.5E-35 | 81 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 81 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 81 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 82 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.42E-13 | 89 | 140 | No hit | No description |
PRINTS | PR00367 | 7.3E-11 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAALFEAAET AAIVAALTRV IADGRGGCAG AATVPPPAPS LIVPPAMGSV AVTESLSLVG 60 AVSSAGGHAG EASAATATAR RYRGVRRRRW GKWAAEIRDP RKAARLWLGT FATAEDAARA 120 YDAAAIRFRG SRAKLNFPED ACRLRRPATA PAPMPVAGSR CPCHGDDGSP PIAPRKVGFV 180 GGNGANGRWL GSWTVGPPPP SPSAAATLHR GVVHGSNGTE EGRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 77 | 138 | 1 | 63 | ATERF1 |
3gcc_A | 4e-21 | 77 | 138 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G15930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624467.2 | 1e-48 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A0D9VGV5 | 1e-154 | A0A0D9VGV5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G15930.1 | 1e-154 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17401 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 2e-12 | ERF family protein |