PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G15580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 436aa    MW: 47416.8 Da    PI: 4.8021
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G15580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP48.21.8e-151381683971
          E2F_TDP  39 vknkrRRiYDilNVLealnliekkekneirwkg 71 
                      v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  LPERR02G15580.1 138 V--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 168
                      4..9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.1E-958168IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-11130169IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-15132170IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.9E-13136168IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.70E-49178284No hitNo description
SuperFamilySSF1440748.37E-34181284No hitNo description
PfamPF164211.9E-32183282IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAWTRPMGQS LRPPLPFAAS SRSPFAAPND YHRFPSPAAA GPSGSGGIGA GGVGGGGDIE  60
EGLVIRTPQK RKAPSKENDV AESSHCMITS PGFTGSPLLT PVSAKSAKTP KSKTKNNKAG  120
PQTPTSNVHH SIHQLLLVQK RRIYDITNVL EGIGLIEKTL KNRIRWKGLD DSGTEVDNGL  180
SALQAEVENL SLKEQSLDNR ISDMREKLQG LTEDENNHRW LYVTEDDIKG LPCFQNETLI  240
AIKAPHGTTL EVPDPDEAGD YLQRRYRIVL RSTMGPIDVY LVSQFDEKFE ELGGGATPSA  300
HANVPQHQPT EVFNATSAGA GQCSNSFAVE NNVQHCQSVP PDPSGSHDFG GMTRIIPSDI  360
DTDADYWLLS EGDISITDMW KSAQVQWEEG LDTDVFLSED ISTPRAHNQQ PAEAAGPLMQ  420
HPTSVEQDME ELLLWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5tuv_B1e-191752845111Transcription factor E2F5
5tuv_E1e-191752845111Transcription factor E2F5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G15580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0417250.0AB041725.1 Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds.
GenBankAK0686890.0AK068689.1 Oryza sativa Japonica Group cDNA clone:J013161I16, full insert sequence.
GenBankHQ8588300.0HQ858830.1 Oryza sativa Japonica Group isolate UT1329 E2F-DP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623378.10.0transcription factor E2FB
TrEMBLA0A0D9VGR80.0A0A0D9VGR8_9ORYZ; Uncharacterized protein
STRINGLPERR02G15580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.19e-87E2F transcription factor 3