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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G14730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 490aa MW: 54111.5 Da PI: 7.511 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.8e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H LPERR02G14730.1 66 YICEVCHKGFQRDQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H + + LPERR02G14730.1 142 WKCDRCSKKYAVQSDWKAHTKIC 164 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.06E-6 | 65 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.741 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 62 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.06E-6 | 137 | 162 | No hit | No description |
SMART | SM00355 | 230 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MSHTSEEESL SNLQQQPKLE TSAAGSSKGD IVMPAVKKRR GHPGNPDPDV EVVALSPKTL 60 LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EVTCPHHDAT 120 RALGDLTGIK KHFSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK 180 DSFITHRAFC DALAEDNSRV NHSLATMVGS LHGQQHDMFS HGVPSLSSSP TDMIANLSSN 240 DHNSDSHLRS LSPYALITRN TALFSNHISP KESGFPLDGN VSSYPYISMN SPYMSATALL 300 QKAAEMGAKT SQDPISPLLL KSFPNNLTSP RDHMNISPGN QGDSLGNSTV NTVCMKTTED 360 ENSYMSGHGN ILINAPWSSG IMRPATVPLI GLMNHPFSMR SEKEIPNIFP ENQTQHNRQE 420 NISGVGDAGL TQDFLGLGGN GNLEMSSETY NADVTALSYS DEQEKSQEHI YSYHQSSLDP 480 AALEKPSWDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-33 | 138 | 201 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 4e-33 | 138 | 201 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G14730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879352.1 | 0.0 | protein indeterminate-domain 2-like | ||||
TrEMBL | A0A0D9VGG5 | 0.0 | A0A0D9VGG5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G14730.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11425 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-107 | indeterminate(ID)-domain 2 |