PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

LPERR02G14280.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 254aa MW: 27392.6 Da PI: 10.5033

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G14280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.9e-09	148	191	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+ +E+ +++ + ++G+g W t ar++ k++t q+ s+ qk+ LPERR02G14280.1 148 WSVQEHSQFLLGLDKYGKGKWITLAREFVKTKTSIQIASHHQKF 191 ****************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	12	11	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.23E-6	13	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-4	15	59	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-12	141	197	IPR009057	Homeodomain-like
SMART	SM00717	0.0052	144	194	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.5E-8	147	193	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.0E-6	148	193	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MHADAPAADP PPSAWTRRQD KLLEMLAWRW KPNPPWDRVA ALLGDKTPAQ ASDRYARLAD 60 ELRRLLVVQP VCDTAAPADG DAGGMMVLLP APTGVEVEAS ATTGVGDAAG PQASTSGAKA 120 RGYGSKLKPR RAPVKRKVGG VRKKPDIWSV QEHSQFLLGL DKYGKGKWIT LAREFVKTKT 180 SIQIASHHQK FCNRMKKREL NACKRTSIHD ITVPAVLPAE ATPAARPSIH NPALPAEVTP 240 AADDAIKSGV LICR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G14280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9VGB1	0.0	A0A0D9VGB1_9ORYZ; Uncharacterized protein
STRING	LPERR02G14280.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14418	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-18	MYB family protein