PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G13860.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HSF

Protein Properties

Length: 485aa MW: 53742.3 Da PI: 4.9759

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G13860.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.1	6.6e-34	27	118	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye+++d++++ ++sws ++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF +++F kg+k+ll LPERR02G13860.1 27 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFIKGQKHLL 111 9******************66679************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k LPERR02G13860.1 112 KNIHRRK 118 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	9.2E-58	23	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.7E-35	23	117	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.11E-33	23	117	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.9E-29	27	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.2E-19	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.2E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.2E-19	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MEVAAGGRGG GGGGGGGGGG GGGPAPFLLK TYEMVDDPST DAVVSWSDAS DASFVVWNHP 60 EFAARLLPAY FKHSNFSSFI RQLNTYGFRK IDPERWEFGN EYFIKGQKHL LKNIHRRKPI 120 HSHSHPPGAL PDNERAIFED EIERLSREKA TLQADLWKFK QQQSGALIQI EDLERRVFDM 180 EQRQAKMITF LQHASKNPQF VNKLVKMAEA SSIFTDAFNK KRRLPGLDYS TENTETTSFY 240 DDHSSTSKQE MGNILNQSFS DKLRLGLCST MTEGNIITLS TQSSNEDNGS PHGKHPECER 300 IERECLPLVP QIMELSDTGT SICPSKSSCF ASPINDEGLT CHLSLTLASC SMDVDKSQVP 360 NANGSSIDHH VEDNPTEAAT DTIEKDDTID RHFVDNQKTS AHASSTDATT PRADAGVANE 420 APAAPTAVVN DKFWEQFLTE RPGCSETEEA SSDLRADPSR EQMEEKRQAY DHSQHDKEDV 480 EQLKL

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MEVAAGGRGG GGGGGGGGGG GGGPAPFLLK TYEMVDDPST DAVVSWSDAS DASFVVWNHP  60
EFAARLLPAY FKHSNFSSFI RQLNTYGFRK IDPERWEFGN EYFIKGQKHL LKNIHRRKPI  120
HSHSHPPGAL PDNERAIFED EIERLSREKA TLQADLWKFK QQQSGALIQI EDLERRVFDM  180
EQRQAKMITF LQHASKNPQF VNKLVKMAEA SSIFTDAFNK KRRLPGLDYS TENTETTSFY  240
DDHSSTSKQE MGNILNQSFS DKLRLGLCST MTEGNIITLS TQSSNEDNGS PHGKHPECER  300
IERECLPLVP QIMELSDTGT SICPSKSSCF ASPINDEGLT CHLSLTLASC SMDVDKSQVP  360
NANGSSIDHH VEDNPTEAAT DTIEKDDTID RHFVDNQKTS AHASSTDATT PRADAGVANE  420
APAAPTAVVN DKFWEQFLTE RPGCSETEEA SSDLRADPSR EQMEEKRQAY DHSQHDKEDV  480
EQLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-22	18	117	17	129	Heat shock factor protein 1
5d5v_B	5e-22	18	117	17	129	Heat shock factor protein 1
5d5v_D	5e-22	18	117	17	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	13	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G13860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065643	0.0	AK065643.1 Oryza sativa Japonica Group cDNA clone:J013035J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622576.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A0D9VG52	0.0	A0A0D9VG52_9ORYZ; Uncharacterized protein
STRING	LPERR02G13860.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-116	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]