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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR02G12290.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
bHLH |
Protein Properties |
Length: 356aa MW: 39435.5 Da PI: 5.2875 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR02G12290.2 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 30.7 | 5.8e-10 | 43 | 92 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r++ + rE+ RRd++N+ f+eL l ++ ++++Ka+iL A++ +k+L
LPERR02G12290.2 43 RKVQKADREKMRRDKLNEQFQELGGTLDPD----RPRNDKATILGDAIQMLKDL 92
5677889********************997....799***************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MDPRSHHHQT PREDGFFHPS DGACPAESSG RTECKSQGLT VMRKVQKADR EKMRRDKLNE 60 QFQELGGTLD PDRPRNDKAT ILGDAIQMLK DLTSQVNKLK AEYTSLSEEA RELTQEKNEL 120 RDEKASLKFE VDNLNTQYQQ RMRVLYPWTG MEPSVVIGPP PAYPFSVPVP IPSGVVPIHP 180 QLQAYPYFRN QTSGTVPNPG TPYMVYTQPV RPPTDQPSNQ FNDPVQHSSS NRSHSMVQDC 240 RRKLSTLQQA SCRGESEFDD VATDLELKTP GSSVALQPEV ANTSKSGGDE PTFSCLSFSQ 300 DSSSDLKKKQ CIQETNGSTL TEGSSSSRCS SSGPPDVSNS VEDESVADDH RSTVQI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK069790 | 0.0 | AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence. |
GenBank | AK103986 | 0.0 | AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence. |
GenBank | HQ858850 | 0.0 | HQ858850.1 Oryza sativa Japonica Group isolate UT1613 bHLH transcription factor mRNA, partial cds. |