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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G12290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 37676.7 Da PI: 5.4488 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.8 | 5.4e-10 | 43 | 92 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f+eL l ++ ++++Ka+iL A++ +k+L LPERR02G12290.1 43 RKVQKADREKMRRDKLNEQFQELGGTLDPD----RPRNDKATILGDAIQMLKDL 92 5677889********************997....799***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.13E-7 | 41 | 96 | No hit | No description |
PROSITE profile | PS50888 | 12.76 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-13 | 43 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-8 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-13 | 43 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-7 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDPRSHHHQT PREDGFFHPS DGACPAESSG RTECKSQGLT VMRKVQKADR EKMRRDKLNE 60 QFQELGGTLD PDRPRNDKAT ILGDAIQMLK DLTSQVNKLK AEYTSLSEEA RELTQEKNEL 120 RDEKASLKFE VDNLNTQYQQ RMRVLYPWTG MEPSVVIGPP PAYPFSVPVP IPSGVVPIHP 180 QLQAYPYFRN QTSGTVPNPG TPYMVYTQPV RPPTDQPSNQ FNDPVQHSSS NRSHSMVQDC 240 RRKLSTLQQA SCRGESEFDD VATDLELKTP GSSVALQPEV ANTDSSSDLK KKQCIQETNG 300 STLTEGSSSS RCSSSGPPDV SNSVEDESVA DDHRSTVQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G12290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069790 | 0.0 | AK069790.1 Oryza sativa Japonica Group cDNA clone:J023031O20, full insert sequence. | |||
GenBank | AK103986 | 0.0 | AK103986.1 Oryza sativa Japonica Group cDNA clone:001-017-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006665082.1 | 0.0 | PREDICTED: transcription factor bHLH121-like isoform X1 | ||||
TrEMBL | A0A0D9VFK0 | 0.0 | A0A0D9VFK0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G12290.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 2e-57 | bHLH family protein |