PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G11190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 329aa    MW: 36101.8 Da    PI: 7.4319
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G11190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12188213126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  LPERR02G11190.1 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.109.5E-14259309IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578509.24E-14267310No hitNo description
PfamPF139209.6E-9267308No hitNo description
PROSITE profilePS5008910.689268306IPR001841Zinc finger, RING-type
CDDcd001622.85E-8268309No hitNo description
SMARTSM001847.4E-5268305IPR001841Zinc finger, RING-type
PROSITE patternPS005180283292IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MADGGGGGGE AGSGGSAPVC SFVRKPPKNI RKRPTARAGS DDEGDDESSG AIAAARAKKA  60
ASSTSKLFFS SADGSSEPRR FQYESSRTIQ ASTDSRATAT LETETEFDRD ARAIRERQLK  120
QAEESLKKNP SAPASGSGSG EVYKGIHGYT DYKAGFRREH TVSSEKAGGS HGPLRASAHI  180
RLSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQIEKEWEEA EKARKRRIAM  240
RGGDGSDGEA GEEEDDDDDD EEALPFACFI CREPFVDPVV TKCKHYFCEH CALKHHSRNK  300
KCFVCNKPTL GIFNAAQEIR KKMAQDKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-6283323100317RING finger protein 113A
5z58_M1e-6283323100317RING finger protein 113A
6ff4_t1e-6283323100317RING finger protein 113A
6ff7_t1e-6283323100317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G11190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315670.0CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-176C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0D9VF430.0A0A0D9VF43_9ORYZ; Uncharacterized protein
STRINGLPERR02G11190.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-118C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]