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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G10620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27438.4 Da PI: 8.7052 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.8 | 8.7e-16 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri n+ +r tf kR++g+ KKA EL +LC+++ ++i++++ LPERR02G10620.1 10 RILNDAQRRATFKKRLKGLTKKATELATLCGVDMCLIVYAK 50 899***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.549 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-13 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.57E-22 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 6.4E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-21 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-16 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MARKRVKLQR ILNDAQRRAT FKKRLKGLTK KATELATLCG VDMCLIVYAK GAVEATEVWP 60 SVPEATSILE RFKAMPDLDR YKRATNLEGF LKDEIDKLQK ELHKVKSEAD ESETKLLLFE 120 ALDGRHPSFE GLSIEQLTNL AWMVDARQKI VNNRLEELRR HGLLPAPTPL LAMGKLPHDI 180 VDNTNVEKPP NQQEGSLMDV GRSIDSLGHD GFGATSGSST AGPNGDMLQV FSSGAGSSSA 240 NQGFLFPPK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 25 | RKRVKLQRILNDAQRRATFKKRLK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G10620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629573.1 | 1e-103 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D9VEX8 | 0.0 | A0A0D9VEX8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G10620.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-29 | AGAMOUS-like 80 |